EcoDiet: Estimating a Diet Matrix from Biotracer and Stomach Content Data (original) (raw)
Biotracers and stomach content analyses are combined in a Bayesian hierarchical model to estimate a probabilistic topology matrix (all trophic link probabilities) and a diet matrix (all diet proportions). The package relies on the JAGS software and the 'jagsUI' package to run a Markov chain Monte Carlo approximation of the different variables.
| Version: | 2.0.1 |
|---|---|
| Depends: | R (≥ 3.5) |
| Imports: | ggplot2 (≥ 3.2), coda (≥ 0.19), stats (≥ 3.6), utils (≥ 3.6), jagsUI (≥ 1.5.2), ggmcmc (≥ 1.1) |
| Suggests: | knitr, rmarkdown, devtools, testthat (≥ 3.0.0) |
| Published: | 2024-03-25 |
| DOI: | 10.32614/CRAN.package.EcoDiet |
| Author: | Pierre-Yves Hernvann [cre, aut], Didier Gascuel [aut], Dorothee Kopp [aut], Marianne Robert [aut], Jerome Guitton [aut], Etienne Rivot [aut], Heloise Thero [aut] |
| Maintainer: | Pierre-Yves Hernvann <pierre.yves.hernvann at gmail.com> |
| BugReports: | https://github.com/pyhernvann/EcoDiet/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| URL: | https://github.com/pyhernvann/EcoDiet |
| NeedsCompilation: | no |
| SystemRequirements: | JAGS (>= 4.3) |
| Citation: | EcoDiet citation info |
| Materials: | README, |
| CRAN checks: | EcoDiet results |
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