GSSTDA: Progression Analysis of Disease with Survival using Topological Data Analysis (original) (raw)
Mapper-based survival analysis with transcriptomics data is designed to carry out. Mapper-based survival analysis is a modification of Progression Analysis of Disease (PAD) where survival data is taken into account in the filtering function. More details in: J. Fores-Martos, B. Suay-Garcia, R. Bosch-Romeu, M.C. Sanfeliu-Alonso, A. Falco, J. Climent, "Progression Analysis of Disease with Survival (PAD-S) by SurvMap identifies different prognostic subgroups of breast cancer in a large combined set of transcriptomics and methylation studies" <doi:10.1101/2022.09.08.507080>.
| Version: | 1.0.0 |
|---|---|
| Depends: | R (≥ 3.5.0) |
| Imports: | base, cluster, stats, survival, utils, visNetwork, ComplexHeatmap, circlize, devtools |
| Suggests: | rmarkdown, knitr, testthat (≥ 3.0.0) |
| Published: | 2024-06-01 |
| DOI: | 10.32614/CRAN.package.GSSTDA |
| Author: | Miriam Esteve  [aut, cre], Raquel Bosch [aut], Jaume Forés [aut], Joan Climent [aut], Antonio Falco [aut] |
| Maintainer: | Miriam Esteve <miriam.estevecampello at uchceu.es> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | GSSTDA results |
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