GenoPop: Genotype Imputation and Population Genomics Efficiently from Variant Call Formatted (VCF) Files (original) (raw)
Tools for efficient processing of large, whole genome genotype data sets in variant call format (VCF). It includes several functions to calculate commonly used population genomic metrics and a method for reference panel free genotype imputation, which is described in the preprint Gurke & Mayer (2024) <doi:10.22541/au.172515591.10119928/v1>.
| Version: | 1.0.0 |
|---|---|
| Imports: | Rsamtools, GenomicRanges, foreach, doParallel, parallel, missForest, IRanges |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0), withr |
| Published: | 2024-11-25 |
| DOI: | 10.32614/CRAN.package.GenoPop |
| Author: | Marie Gurke  [aut, cre] |
| Maintainer: | Marie Gurke |
| License: | GPL (≥ 3) |
| NeedsCompilation: | no |
| Citation: | GenoPop citation info |
| Materials: | README |
| CRAN checks: | GenoPop results |
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