MonoPhy: Explore Monophyly of Taxonomic Groups in a Phylogeny (original) (raw)
Requires rooted phylogeny as input and creates a table of genera, their monophyly-status, which taxa cause problems in monophyly etc. Different information can be extracted from the output and a plot function allows visualization of the results in a number of ways. "MonoPhy: a simple R package to find and visualize monophyly issues." Schwery, O. & O'Meara, B.C. (2016) <doi:10.7717/peerj-cs.56>.
| Version: | 1.3.2 |
|---|---|
| Depends: | ape, phytools |
| Imports: | phangorn, RColorBrewer |
| Suggests: | knitr, testthat, paleotree, rmarkdown, taxize |
| Published: | 2024-10-17 |
| DOI: | 10.32614/CRAN.package.MonoPhy |
| Author: | Orlando Schwery [aut, cre], Brian C. O'Meara [aut, ctb], Peter Cowman [ctb] |
| Maintainer: | Orlando Schwery <schwery.macroevo at pm.me> |
| License: | GPL-3 |
| NeedsCompilation: | no |
| Citation: | MonoPhy citation info |
| CRAN checks: | MonoPhy results |
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