NAIR: Network Analysis of Immune Repertoire (original) (raw)
Pipelines for studying the adaptive immune repertoire of T cells and B cells via network analysis based on receptor sequence similarity. Relate clinical outcomes to immune repertoires based on their network properties, or to particular clusters and clones within a repertoire. Yang et al. (2023) <doi:10.3389/fimmu.2023.1181825>.
| Version: | 1.0.4 |
|---|---|
| Depends: | R (≥ 3.1.0) |
| Imports: | Rcpp (≥ 1.0.8), lifecycle, igraph, ggraph, ggplot2, grDevices, utils, Matrix, stats, dplyr, rlang |
| LinkingTo: | Rcpp, RcppArmadillo (≥ 0.10.8.0.0) |
| Suggests: | knitr, rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2024-03-03 |
| DOI: | 10.32614/CRAN.package.NAIR |
| Author: | Brian Neal [aut, cre], Hai Yang [aut], Daniil Matveev [aut], Phi Long Le [aut], Li Zhang [cph, aut] |
| Maintainer: | Brian Neal <Brian.Neal at ucsf.edu> |
| License: | GPL (≥ 3) |
| URL: | https://mlizhangx.github.io/Network-Analysis-for-Repertoire-Sequencing-/,https://github.com/mlizhangx/Network-Analysis-for-Repertoire-Sequencing- |
| NeedsCompilation: | yes |
| Materials: | README, NEWS |
| CRAN checks: | NAIR results [issues need fixing before 2025-12-15] |
Documentation:
Downloads:
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=NAIRto link to this page.