PhenotypeR: Assess Study Cohorts Using a Common Data Model (original) (raw)

Phenotype study cohorts in data mapped to the Observational Medical Outcomes Partnership Common Data Model. Diagnostics are run at the database, code list, cohort, and population level to assess whether study cohorts are ready for research.

Version: 0.2.0
Depends: R (≥ 4.1.0)
Imports: CodelistGenerator (≥ 3.4.0), CohortCharacteristics (≥ 1.0.0), CohortConstructor (≥ 0.4.0), cli, dplyr, IncidencePrevalence (≥ 1.2.0), omopgenerics (≥ 1.2.0), OmopSketch (≥ 0.5.0), magrittr, purrr, rlang, vctrs, MeasurementDiagnostics (≥ 0.1.0), readr
Suggests: CDMConnector (≥ 1.6.1), duckdb, DBI, gt, omock, testthat (≥ 3.0.0), knitr, glue, RPostgres, PatientProfiles (≥ 1.2.2), ggplot2, ggpubr, stringr, shiny (≥ 1.11.1), DiagrammeR, DiagrammeRsvg, reactable, reactablefmtr, rsvg, sortable, shinycssloaders, here, DT, bslib, shinyWidgets, plotly, tidyr, scales, usethis, rmarkdown, CohortSurvival (≥ 1.0.2), ellmer, htmltools, visOmopResults (≥ 1.0.0), rsconnect, cpp11, progress
Published: 2025-07-31
DOI: 10.32614/CRAN.package.PhenotypeR
Author: Edward Burn ORCID iD [aut, cre], Marti Catala ORCID iD [aut], Xihang Chen ORCID iD [aut], Marta Alcalde-HerraizORCID iD [aut], Nuria Mercade-BesoraORCID iD [aut], Albert Prats-UribeORCID iD [aut]
Maintainer: Edward Burn <edward.burn at ndorms.ox.ac.uk>
License: Apache License (≥ 2)
URL: https://ohdsi.github.io/PhenotypeR/
NeedsCompilation: no
Materials: README
CRAN checks: PhenotypeR results

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