RDML: Importing Real-Time Thermo Cycler (qPCR) Data from RDML Format Files (original) (raw)
Imports real-time thermo cycler (qPCR) data from Real-time PCR Data Markup Language (RDML) and transforms to the appropriate formats of the 'qpcR' and 'chipPCR' packages, as described in Rodiger et al. (2017) <doi:10.1093/bioinformatics/btx528>. Contains a dendrogram visualization for the structure of RDML object and GUI for RDML editing.
Version:
1.1
Depends:
R (≥ 3.2.0)
Imports:
checkmate (≥ 1.6.2), data.table, pipeR, readxl, rlist (≥ 0.4), R6 (≥ 2.0.1), stringr, tools (≥ 3.2), xml2 (≥ 1.0), lubridate (≥ 1.6.0)
Suggests:
chipPCR, magrittr, reshape2, qpcR, dplyr, ggplot2, knitr, kfigr, MBmca, shiny, shinyjs, shinythemes, V8, testthat
Published:
2025-07-23
DOI:
Author:
Konstantin Blagodatskikh [cre, aut], Stefan Roediger [aut], Michal Burdukiewicz
[aut], Andrej-Nikolai Spiess [aut]
Maintainer:
Konstantin Blagodatskikh <k.blag at yandex.ru>
License:
MIT + file
URL:
https://github.com/PCRuniversum/RDML
NeedsCompilation:
no
Materials:
CRAN checks: