STDistance: Spatial Transcriptomics Distance Calculation and Visualization (original) (raw)
Analysis of spatial relationships between cell types in spatial transcriptomics data. Spatial proximity is a critical factor in cell-cell communication. The package calculates nearest neighbor distances between specified cell types and provides visualization tools to explore spatial patterns. Applications include studying cell-cell interactions, immune microenvironment characterization, and spatial organization of tissues.
| Version: | 0.6.6 |
|---|---|
| Depends: | R (≥ 4.0.0) |
| Imports: | dplyr, ggplot2, Hmisc, scales, stats, RColorBrewer, tidyr |
| Suggests: | testthat, knitr, rmarkdown |
| Published: | 2025-07-22 |
| DOI: | 10.32614/CRAN.package.STDistance |
| Author: | Zixiang Wang  [aut, cre], Lei Yang [aut], Zhaojian Liu [aut] |
| Maintainer: | Zixiang Wang |
| License: | GPL (≥ 3) |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | STDistance results |
Documentation:
Downloads:
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=STDistanceto link to this page.