TBRDist: Rearrangement Distances Between Unrooted Phylogenetic Trees (original) (raw)
Fast calculation of the Subtree Prune and Regraft (SPR), Tree Bisection and Reconnection (TBR) and Replug distances between unrooted trees, using the algorithms of Whidden and Matsen (2017) <doi:10.48550/arXiv.1511.07529>.
| Version: | 1.0.2 |
|---|---|
| Depends: | R (≥ 3.4.0) |
| Imports: | ape, Rdpack, TreeDist, TreeTools (≥ 1.1.0) |
| LinkingTo: | BH, Rcpp |
| Suggests: | knitr, rmarkdown, testthat |
| Published: | 2020-09-17 |
| DOI: | 10.32614/CRAN.package.TBRDist |
| Author: | Martin R. Smith  [aut, cre, cph], Chris Whidden [cph] |
| Maintainer: | Martin R. Smith <martin.smith at durham.ac.uk> |
| BugReports: | https://github.com/ms609/TBRDist/issues/ |
| License: | GPL (≥ 3) |
| Copyright: | Underlying C++ code copyright 2018 Chris Whidden. |
| URL: | https://ms609.github.io/TBRDist/,https://github.com/ms609/TBRDist/,https://github.com/cwhidden/uspr/ |
| NeedsCompilation: | yes |
| SystemRequirements: | C++11 |
| Language: | en-GB |
| Citation: | TBRDist citation info |
| Materials: | NEWS |
| In views: | Phylogenetics |
| CRAN checks: | TBRDist results |
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