doi:10.1093/biostatistics/5.2.155>. Allows optimisation and visualisation of expected error rates based on tail posterior probability tests. Based on code written by Catalina Vallejos for BASiCS, see Beyond comparisons of means: understanding changes in gene expression at the single-cell level Vallejos et al. (2016) <doi:10.1186/s13059-016-0930-3>.">

bayefdr: Bayesian Estimation and Optimisation of Expected False Discovery Rate (original) (raw)

Implements the Bayesian FDR control described by Newton et al. (2004), <doi:10.1093/biostatistics/5.2.155>. Allows optimisation and visualisation of expected error rates based on tail posterior probability tests. Based on code written by Catalina Vallejos for BASiCS, see Beyond comparisons of means: understanding changes in gene expression at the single-cell level Vallejos et al. (2016) <doi:10.1186/s13059-016-0930-3>.

Version: 0.2.1
Imports: ggplot2, reshape2, assertthat, utils, cowplot, ggExtra, stats
Suggests: testthat, pkgdown
Published: 2022-10-26
DOI: 10.32614/CRAN.package.bayefdr
Author: Alan O'Callaghan [aut, cre], Catalina Vallejos [aut]
Maintainer: Alan O'Callaghan <alan.ocallaghan at outlook.com>
BugReports: https://github.com/VallejosGroup/bayefdr/issues
License: GPL-3
URL: https://github.com/VallejosGroup/bayefdr
NeedsCompilation: no
Language: en-gb
Materials: README, NEWS
In views: Bayesian, Omics
CRAN checks: bayefdr results

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