bigsnpr: Analysis of Massive SNP Arrays (original) (raw)
Easy-to-use, efficient, flexible and scalable tools for analyzing massive SNP arrays. Privé et al. (2018) <doi:10.1093/bioinformatics/bty185>.
| Version: | 1.12.21 |
|---|---|
| Depends: | R (≥ 3.4), bigstatsr (≥ 1.6.2) |
| Imports: | bigassertr (≥ 0.1.7), bigparallelr, bigsparser (≥ 0.6), bigreadr, bigutilsr (≥ 0.3.3), data.table (≥ 1.12.4), doRNG, foreach, ggplot2, magrittr, Matrix (≥ 1.3.0), methods, Rcpp, runonce (≥ 0.2.3), stats, vctrs |
| LinkingTo: | bigsparser, bigstatsr, Rcpp, RcppArmadillo (≥ 0.9.600), rmio, roptim (≥ 0.1.6) |
| Suggests: | bindata, covr, dbplyr (≥ 1.4), dplyr, gaston, glue, Hmisc, microbenchmark, pcadapt (≥ 4.1), quadprog, RhpcBLASctl, rmutil, RSpectra, RSQLite, R.utils, spelling, testthat, tibble, xgboost |
| Published: | 2025-08-21 |
| DOI: | 10.32614/CRAN.package.bigsnpr |
| Author: | Florian Privé [aut, cre], Michael Blum [ths], Hugues Aschard [ths], Bjarni Jóhann Vilhjálmsson [ths] |
| Maintainer: | Florian Privé <florian.prive.21 at gmail.com> |
| BugReports: | https://github.com/privefl/bigsnpr/issues |
| License: | GPL-3 |
| URL: | https://privefl.github.io/bigsnpr/ |
| NeedsCompilation: | yes |
| SystemRequirements: | A few functions from package 'bigsnpr' wrap existing software such as 'PLINK' <www.cog-genomics.org/plink2>. Functions are provided to download these software. Note that these external software might not work for some operating systems (e.g. 'PLINK' might not work on Solaris). |
| Language: | en-US |
| Citation: | bigsnpr citation info |
| Materials: | README, NEWS |
| CRAN checks: | bigsnpr results |
Documentation:
Downloads:
Reverse dependencies:
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=bigsnprto link to this page.