doi:10.1111/2041-210X.13490>. Provides a collection of functions to perform biological conversion among classes (transcription, translation) and basic operations on sequences (detection, selection and replacement based on positions or patterns). The package also provides functions to import and export sequences from and to other package formats.">

bioseq: A Toolbox for Manipulating Biological Sequences (original) (raw)

Classes and functions to work with biological sequences (DNA, RNA and amino acid sequences). Implements S3 infrastructure to work with biological sequences as described in Keck (2020) <doi:10.1111/2041-210X.13490>. Provides a collection of functions to perform biological conversion among classes (transcription, translation) and basic operations on sequences (detection, selection and replacement based on positions or patterns). The package also provides functions to import and export sequences from and to other package formats.

Version: 0.1.5
Depends: R (≥ 3.1.0)
Imports: methods, vctrs, tibble, ape, crayon, dplyr, pillar, stringi, stringr, stringdist, readr, rlang
Suggests: knitr, rmarkdown, testthat (≥ 2.1.0), covr
Published: 2025-09-29
DOI: 10.32614/CRAN.package.bioseq
Author: Francois Keck ORCID iD [aut, cre, cph]
Maintainer: Francois Keck <francois.keck at gmail.com>
BugReports: https://github.com/fkeck/bioseq/issues
License: GPL-3
URL: https://fkeck.github.io/bioseq/
NeedsCompilation: no
Citation: bioseq citation info
Materials: README, NEWS
In views: Omics
CRAN checks: bioseq results

Documentation:

Downloads:

Reverse dependencies:

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=bioseqto link to this page.