breathtestcore: Core Functions to Read and Fit 13c Time Series from Breath Tests (original) (raw)
Reads several formats of 13C data (IRIS/Wagner, BreathID) and CSV. Creates artificial sample data for testing. Fits Maes/Ghoos, Bluck-Coward self-correcting formula using 'nls', 'nlme'. Methods to fit breath test curves with Bayesian Stan methods are refactored to package 'breathteststan'. For a Shiny GUI, see package 'dmenne/breathtestshiny' on github.
Version:
0.8.7
Depends:
R (≥ 4.0.0)
Imports:
assertthat, dplyr, ggfittext, ggplot2, broom (≥ 0.7.0), graphics, grid, MASS, methods, multcomp, nlme, purrr, readr, readxl, signal, stats, stringr, tibble (≥ 3.0.0), tidyr, tools, utils, xml2
Suggests:
base, gridExtra, knitr, rmarkdown, testthat (≥ 2.99), breathteststan, covr, parallelly
Published:
2024-01-24
DOI:
10.32614/CRAN.package.breathtestcore
Author:
Dieter Menne [aut, cre], Menne Biomed Consulting Tuebingen [cph], Benjamin Misselwitz [fnd], Mark Fox [fnd], Andreas Steingoetter [dtc], University Hospital of Zurich, Dep. Gastroenterology [fnd, dtc]
Maintainer:
Dieter Menne <dieter.menne at menne-biomed.de>
BugReports:
https://github.com/dmenne/breathtestcore/issues
License:
URL:
https://github.com/dmenne/breathtestcore,https://dmenne.github.io/breathtestcore/
NeedsCompilation:
no
SystemRequirements:
pandoc
CRAN checks: