corHMM: Hidden Markov Models of Character Evolution (original) (raw)
Fits hidden Markov models of discrete character evolution which allow different transition rate classes on different portions of a phylogeny. Beaulieu et al (2013) <doi:10.1093/sysbio/syt034>.
| Version: | 2.8 |
|---|---|
| Depends: | ape, nloptr, GenSA |
| Imports: | expm, numDeriv, corpcor, MASS, nnet, phangorn, parallel, viridis, Rmpfr, igraph, phytools |
| Suggests: | testthat, knitr, rmarkdown |
| Published: | 2022-06-13 |
| DOI: | 10.32614/CRAN.package.corHMM |
| Author: | Jeremy Beaulieu [aut, cre], Brian O'Meara [aut], Jeffrey Oliver [aut], James Boyko [aut] |
| Maintainer: | Jeremy Beaulieu |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| NeedsCompilation: | no |
| CRAN checks: | corHMM results |
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