crosshap: Local Haplotype Clustering and Visualization (original) (raw)
A local haplotyping visualization toolbox to capture major patterns of co-inheritance between clusters of linked variants, whilst connecting findings to phenotypic and demographic traits across individuals. 'crosshap' enables users to explore and understand genomic variation across a trait-associated region. For an example of successful local haplotype analysis, see Marsh et al. (2022) <doi:10.1007/s00122-022-04045-8>.
Version: | 1.4.0 |
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Depends: | R (≥ 4.00) |
Imports: | cli, clustree, data.table, dbscan, dplyr, ggdist, ggplot2, ggpp, gridExtra, gtable, magrittr, patchwork, rlang, scales, tibble, tidyr |
Suggests: | covr, knitr, rmarkdown, testthat (≥ 3.0.0), umap, vdiffr |
Published: | 2024-03-31 |
DOI: | 10.32614/CRAN.package.crosshap |
Author: | Jacob Marsh [aut, cre], Brady Johnston [aut], Jakob Petereit [aut] |
Maintainer: | Jacob Marsh <jake.marsh at live.com.au> |
BugReports: | https://github.com/jacobimarsh/crosshap/issues |
License: | MIT + file |
URL: | https://jacobimarsh.github.io/crosshap/ |
NeedsCompilation: | no |
Materials: | README |
CRAN checks: | crosshap results |
Documentation:
Downloads:
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