dyngen: A Multi-Modal Simulator for Spearheading Single-Cell Omics Analyses

A novel, multi-modal simulation engine for studying dynamic cellular processes at single-cell resolution. 'dyngen' is more flexible than current single-cell simulation engines. It allows better method development and benchmarking, thereby stimulating development and testing of novel computational methods. Cannoodt et al. (2021) <doi:10.1038/s41467-021-24152-2>.

Version:

1.0.5

Depends:

R (≥ 3.5.0)

Imports:

assertthat, dplyr, dynutils (≥ 1.0.10), ggplot2, ggraph (≥ 2.0), ggrepel, GillespieSSA2 (≥ 0.2.6), grDevices, grid, igraph, lmds, Matrix, methods, patchwork, pbapply, purrr, rlang (≥ 0.4.1), stats, tibble, tidygraph, tidyr, utils, viridis