NEWS (original) (raw)

eaf 2.5.2

• Use gsl from Rtools >= 42 on Windows (contributed by @kalibera).

eaf 2.5.1

• Fix Clang warning.

eaf 2.5

• The argument to.range of normalise()has been renamed to to_range.
• Silence some warnings with GCC 12.
• Replace dots in function names with underscore (_) to silence CRAN Note.

eaf 2.4

• If the installation cannot find the Gnu Scientific Library, it gives hints on how to install it on various operating systems.
• pdf_crop() can optionally embed fonts.
• Fix calculation of ideal inlargest_eafdiff().
• Fix configure script to use the same compiler and flags as R.

eaf 2.3

• eafplot() now returns the attainment surfaces computed invisibly.
• New functions pdf_crop(),write_datasets(), attsurf2df().
• Fix bug that made polygons extend beyond their boundaries affecting eafdiff() andeafdiffplot().

eaf 2.2

• col argument of eafdiffplot() may be a colormap function.

eaf 2.1

• Improve documentation of igd().
• Fix errors with single-point attainment surfaces.
• Fix bug in eafplot.list().

eaf 2.0

• read_datasets() is able to read files compressed with xz.
• eafs() and eafdiff() and the plotting functions using them now consume slightly less memory.
• New function whv_hype() to estimate weighted hypervolume using Monte-Carlo sampling.
• New functions total_whv_rect() andwhv_rect() to compute weighted hypervolume with rectangular weighted regions.
• New functions largest_eafdiff(),choose_eafdiffplot() and choose_eafdiff() for converting EAF differences into weighted regions for calculating the weighted hypervolume.
• New function avg_hausdorff_dist() for computing the averaged Hausdorff distance.

eaf 1.9-1

• Fixes to Makefiles for non-GCC compilers and parallel build setups.

eaf 1.9

• Compute Vorob’ev threshold, expectation and deviation. Plots of the symmetric deviation. (Mickael Binois)
• Non-integer EAF percentiles are computed correctly.
• Various aesthetic improvements in eafplot() andeafdiffplot().
• Functions for computing hypervolume, hypervolume contributions, epsilon metric, IGD+, filter dominated points, and fast normalisation of ranges.
• Command-line tools for computing the above are installed insystem.file(package="eaf", "bin/").
• Online documentation available at: http://lopez-ibanez.eu/eaftools
• New read_datasets() replaces deprecatedread.data.sets(). New parameter text ofread_datasets().
• New eafdiff() function for computing EAF differences.
• The data.frame method for eafplot has been removed. It had unexpected behavior and the default method handlesdata.frame already.
• Python script to compute EAF differences installed atsystem.file(package="eaf", "scripts/eafdiff.py").

eaf 1.8

• Development version moved to GitHub: https://github.com/MLopez-Ibanez/eaf
• Remove leading zeros from version number.
• New parameters left.panel.last andright.panel.last of eafdiffplot().
• Export and document function eafs() to compute EAFs.
• eafdiff.pl: Handle --colors=,--intervals=.
• Fix crash in eafplot() if sets is a vector of strings.
• Reset layout in eafdiffplot().
• Compute eaf for 3D.
• Added testthat testing framework.
• The documentation is now generated with Roxygen2.
• Entry points to C code are now properly registered.

eaf 1.07

• Silence CRAN warning for GNU extensions in Makefiles ininst/scripts/eaf/Makefile.

eaf 1.06

• Fix bug when automatically generating a legend ineafplot() with the formula interface (Thanks to Bernd Bischl for reporting this)
• Improve handling of various newline character formats.
• Reduce memory consumption (up to four times less memory).
• eafdiff.pl: Mention option--legendpos=none to hide the legend.
• eafplot.pl: Add options --maximise and--xmaximise and --colors=. Fix bug with--area.
• eafplot.default() now requires two colors whentype=="area" and a palette is interpolated between these two colors for all the different levels plotted (Thanks to Alexandre Quemy for the suggestion).

eaf 1.05

• Implement type = "area" foreafdiffplot(). This is now the default.
  The idea for the algorithm to compute the areas was provided by Carlos M. Fonseca. The implementation uses R polygons, which some PDF viewers may have trouble rendering correctly (See https://cran.r-project.org/doc/FAQ/R-FAQ.html#Why-are-there-unwanted-borders).
  Plots will look correct when printed. To get the previous behavior use eafdiffplot(, type = "point").
• Attempt to deal with DOS/Unix newlines correctly.
• eafplot.pl: Cleanups. (--single, --output, --legend): New options. Default to PDF.
• eafdiff.pl: Many cleanups. EAF diff withtype="area" is the default now. Parameter--cex replaced by --scale. Do not requireps2eps. Handle --obj1= better. Crop pdf before converting to PNG. (--noattsurfs): New option. (--output-dir,--output): New options. (--eps): New option. PDF is the default now.
• Force eafdiffplot() to use a square plotting region.
• read.data.sets() normalizes paths, thus it works with files such as ~/file.
• Function eafdiffplot() handlespercentiles=NA and grand.lines parameter.
• Fix bug with ranges and maximise=TRUE ineafdiffplot().
• Fix points.steps to work correctly for all values ofmaximise.
• Fix bug ineafdiffplot(..., maximise=c(TRUE,FALSE), full.eaf = TRUE)
• Fix "log" parameter in eafplot() andeafdiffplot().
• Avoid that eafplot.formula modifies global options.
• Add 'axes' parameter toeafplot().
• To avoid confusion, the arguments 'xaxis.side' and'yaxis.side' of eafplot() can only take valuesc("below", "above") and c("left", "right"), respectively.
• Add missing Makefile in inst/scripts/eaf/.

eaf 1.04

• Fix issues with only one point in the EAF.

eaf 1.03

• Handle maximise argument in eafdiffplot() and--maximise command-line option ineafdiff.pl
• R/calls.R (eafplot.data.frame): Fix problem with main parameter.

eaf 1.00

• Initial release available in CRAN.