doi:10.1126/science.aag1322>. Plot, save, or export the calculated probabilities for use in your own research. By default, the package calculates subtype-specific imprinting probabilities, but with user-provided frequency data, it is possible to calculate probabilities for arbitrary kinds of primary exposure to influenza A, including primary vaccination and exposure to specific clades, strains, etc.">

imprinting: Calculate Birth Year-Specific Probabilities of Immune Imprinting to Influenza (original) (raw)

Reconstruct birth-year specific probabilities of immune imprinting to influenza A, using the methods of Gostic et al. (2016) <doi:10.1126/science.aag1322>. Plot, save, or export the calculated probabilities for use in your own research. By default, the package calculates subtype-specific imprinting probabilities, but with user-provided frequency data, it is possible to calculate probabilities for arbitrary kinds of primary exposure to influenza A, including primary vaccination and exposure to specific clades, strains, etc.

Version: 0.1.1
Depends: R (≥ 3.5.0)
Imports: dplyr (≥ 1.0.9), tidyr (≥ 1.2.0), cowplot (≥ 1.0.0), ggplot2, tidyselect
Suggests: knitr, rmarkdown, testthat (≥ 3.0.0), devtools
Published: 2022-12-16
DOI: 10.32614/CRAN.package.imprinting
Author: Katelyn Gostic [aut], Alex Byrnes [ctb, cre]
Maintainer: Alex Byrnes
BugReports: https://github.com/cobeylab/imprinting/issues
License: MIT + file
URL: https://cobeylab.github.io/imprinting/
NeedsCompilation: no
CRAN checks: imprinting results

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