doi:10.1016/j.tree.2015.09.007>). The Gibbs sampler is written in 'C++'. It uses 'Rcpp', 'Armadillo' and 'GSL' to maximize computation efficiency.">

jSDM: Joint Species Distribution Models (original) (raw)

Fits joint species distribution models ('jSDM') in a hierarchical Bayesian framework (Warton and al. 2015 <doi:10.1016/j.tree.2015.09.007>). The Gibbs sampler is written in 'C++'. It uses 'Rcpp', 'Armadillo' and 'GSL' to maximize computation efficiency.

Version:

0.2.6

Depends:

R (≥ 3.5.0)

Imports:

Rcpp (≥ 1.0.0), graphics, stats, coda, corrplot, stringi, MASS, parallel, doParallel, foreach, methods

LinkingTo:

Rcpp, RcppArmadillo, RcppGSL

Suggests:

knitr, kableExtra, terra, dplyr, rmarkdown, bookdown, testthat (≥ 3.0.0), boral, Hmsc, BayesComm, snow, snowfall, ggplot2, covr, ape, gstat

Published:

2023-07-22

DOI:

10.32614/CRAN.package.jSDM

Author:

Jeanne Clément [aut, cre], Ghislain Vieilledent [aut], Frédéric Gosselin [ctb], CIRAD [cph, fnd]

Maintainer:

Jeanne Clément <jeanne.clement16 at laposte.net>

BugReports:

https://github.com/ghislainv/jSDM/issues

License:

URL:

https://ecology.ghislainv.fr/jSDM/,https://github.com/ghislainv/jSDM

NeedsCompilation:

yes

SystemRequirements:

GNU GSL

Materials:

CRAN checks: