limorhyde2: Quantify Rhythmicity and Differential Rhythmicity in Genomic Data (original) (raw)
Fit linear models based on periodic splines, moderate model coefficients using multivariate adaptive shrinkage, then compute properties of the moderated curves.
| Version: | 0.1.0 |
|---|---|
| Depends: | R (≥ 3.6) |
| Imports: | abind (≥ 1.4-5), ashr (≥ 2.2-54), checkmate (≥ 2.0.0), data.table (≥ 1.12.8), DESeq2 (≥ 1.30.0), foreach (≥ 1.5.0), HDInterval (≥ 0.2.2), iterators (≥ 1.0.12), limma (≥ 3.42.2), mashr (≥ 0.2.50), pbs (≥ 1.1), zeallot (≥ 0.1.0) |
| Suggests: | cowplot (≥ 1.1.1), knitr, doParallel (≥ 1.0.15), ggplot2 (≥ 3.3.5), glue (≥ 1.6.1), qs (≥ 0.24.1), rmarkdown, testthat (≥ 3.0.0) |
| Published: | 2023-01-26 |
| DOI: | 10.32614/CRAN.package.limorhyde2 |
| Author: | Jake Hughey [aut, cre], Dora Obodo [aut], Elliot Outland [aut] |
| Maintainer: | Jake Hughey |
| License: | GPL-2 |
| URL: | https://limorhyde2.hugheylab.org,https://github.com/hugheylab/limorhyde2 |
| NeedsCompilation: | no |
| Materials: | NEWS |
| CRAN checks: | limorhyde2 results |
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