localScore: Package for Sequence Analysis by Local Score (original) (raw)
Functionalities for calculating the local score and calculating statistical relevance (p-value) to find a local Score in a sequence of given distribution (S. Mercier and J.-J. Daudin (2001) <https://hal.science/hal-00714174/>) ; S. Karlin and S. Altschul (1990) <https://pmc.ncbi.nlm.nih.gov/articles/PMC53667/> ; S. Mercier, D. Cellier and F. Charlot (2003) <https://hal.science/hal-00937529v1/> ; A. Lagnoux, S. Mercier and P. Valois (2017) <doi:10.1093/bioinformatics/btw699> ).
| Version: | 2.0.3 | ||
|---|---|---|---|
| Depends: | R (≥ 3.2.0) | ||
| Imports: | Rcpp (≥ 0.12.16), utils | ||
| LinkingTo: | Rcpp | ||
| Suggests: | knitr, rmarkdown, testthat (≥ 2.1.0) | ||
| Published: | 2025-04-24 | ||
| DOI: | 10.32614/CRAN.package.localScore | ||
| Author: | Sebastian Simon [aut], Chris Verschelden [aut], Charly Marty [aut], David Robelin [aut, cre], Sabine Mercier [aut], Sebastien Dejean [aut], The authors of Eigen the library for the included version of Eigen [cph] | ||
| Maintainer: | David Robelin <david.robelin at inrae.fr> | ||
| License: | GPL-2 | GPL-3 | file [expanded from: GPL (≥ 2) | file LICENSE] |
| Copyright: | See the file COPYRIGHTS for various embedded Eigen library copyright details | ||
| NeedsCompilation: | yes | ||
| CRAN checks: | localScore results |
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