doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.">

myTAI: Evolutionary Transcriptomics (original) (raw)

Investigate the evolution of biological processes by capturing evolutionary signatures in transcriptomes (Drost et al. (2018) <doi:10.1093/bioinformatics/btx835>). This package aims to provide a transcriptome analysis environment to quantify the average evolutionary age of genes contributing to a transcriptome of interest.

Version: 2.3.4
Depends: R (≥ 4.1)
Imports: S7, patchwork, purrr, tidyr, Rcpp, memoise, fitdistrplus (≥ 1.1-5), dplyr (≥ 0.3.0), RColorBrewer (≥ 1.1-2), ggplot2 (≥ 1.0.1), ggforce, ggridges, ggtext, readr (≥ 0.2.2), tibble, ggplotify, ggrepel, Matrix, pheatmap
LinkingTo: RcppArmadillo, RcppThread, Rcpp
Suggests: knitr (≥ 1.6), rmarkdown (≥ 0.3.3), testthat (≥ 0.9.1), mgcv, Seurat, SeuratObject, uwot, decor, DESeq2, gganimate, taxize
Published: 2025-11-11
DOI: 10.32614/CRAN.package.myTAI
Author: Hajk-Georg Drost ORCID iD [aut, cre], Stefan Manolache ORCID iD [aut, ctb], Jaruwatana Sodai LotharukpongORCID iD [aut, ctb], Nikola Kalábová ORCID iD [aut, ctb], Filipa Martins Costa [aut, ctb], Kristian K UllrichORCID iD [aut, ctb]
Maintainer: Hajk-Georg Drost <hajk-georg.drost at tuebingen.mpg.de>
BugReports: https://github.com/drostlab/myTAI/issues
License: GPL-2
URL: https://drostlab.github.io/myTAI/
NeedsCompilation: yes
Citation: myTAI citation info
Materials: README, NEWS
CRAN checks: myTAI results

Documentation:

Downloads:

Linking:

Please use the canonical formhttps://CRAN.R-project.org/package=myTAIto link to this page.