doi:10.1093/bioinformatics/btg412>), and features several tools for command-line tree manipulation and import/export via Newick parenthetic text.">

phylogram: Dendrograms for Evolutionary Analysis (original) (raw)

Contains functions for developing phylogenetic trees as deeply-nested lists ("dendrogram" objects). Enables bi-directional conversion between dendrogram and "phylo" objects (see Paradis et al (2004) <doi:10.1093/bioinformatics/btg412>), and features several tools for command-line tree manipulation and import/export via Newick parenthetic text.

Version: 2.1.0
Imports: ape (≥ 4.0), methods, stats
Suggests: dendextend, knitr, rmarkdown, testthat
Published: 2018-06-25
DOI: 10.32614/CRAN.package.phylogram
Author: Shaun Wilkinson ORCID iD [aut, cre], Simon Davy ORCID iD [aut]
Maintainer: Shaun Wilkinson
BugReports: http://github.com/ropensci/phylogram/issues
License: GPL-3
URL: http://github.com/ropensci/phylogram
NeedsCompilation: no
Citation: phylogram citation info
Materials: README
In views: Phylogenetics
CRAN checks: phylogram results

Documentation:

Reference manual: phylogram.html , <phylogram.pdf>
Vignettes: Introduction to the phylogram package (source, R code)

Downloads:

Package source: phylogram_2.1.0.tar.gz
Windows binaries: r-devel: phylogram_2.1.0.zip, r-release: phylogram_2.1.0.zip, r-oldrel: phylogram_2.1.0.zip
macOS binaries: r-release (arm64): phylogram_2.1.0.tgz, r-oldrel (arm64): phylogram_2.1.0.tgz, r-release (x86_64): phylogram_2.1.0.tgz, r-oldrel (x86_64): phylogram_2.1.0.tgz
Old sources: phylogram archive

Reverse dependencies:

Reverse imports: dclust, didec, insect, kmer
Reverse suggests: MoBPS, muscat

Linking:

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