qqman:

An R package for creating Q-Q and manhattan plots from GWAS results. (original) (raw)

CRAN_Status_Badge

DOI

qqman.gif

Citation

If you’d like to cite qqman (appreciated but not required), please cite the publication below:

Turner, (2018). qqman: an R package for visualizing GWAS results using Q-Q and manhattan plots. Journal of Open Source Software, 3(25), 731, https://doi.org/10.21105/joss.00731

More details are found in the preprint:

Turner, S.D. qqman: an R package for visualizing GWAS results using Q-Q and manhattan plots. _biorXiv_DOI: 10.1101/005165.

Installation

Install the stable release from CRAN:

install.packages("qqman")

Or install directly from github using devtools

library(devtools)
install_github("stephenturner/qqman")

Or install the most recent development release with devtools (note, there be dragons here):

library(devtools)
install_github("stephenturner/qqman", ref="dev")

Load the package each time you use it:

Usage

See the online package vignette for more examples:

Take a look at the built-in data:

Basic manhattan plot using built-in data:

Basic Q-Q plot using built-in data:

Get help:

Notes