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qtl2: Quantitative Trait Locus Mapping in Experimental Crosses (original) (raw)

Provides a set of tools to perform quantitative trait locus (QTL) analysis in experimental crosses. It is a reimplementation of the 'R/qtl' package to better handle high-dimensional data and complex cross designs. Broman et al. (2019) <doi:10.1534/genetics.118.301595>.

Version: 0.36
Depends: R (≥ 3.1.0)
Imports: Rcpp (≥ 1.0.7), yaml (≥ 2.1.13), jsonlite (≥ 0.9.17), data.table (≥ 1.10.4-3), parallel, stats, utils, graphics, grDevices, RSQLite
LinkingTo: Rcpp, RcppEigen
Suggests: testthat, devtools, roxygen2, vdiffr, qtl
Published: 2024-05-13
DOI: 10.32614/CRAN.package.qtl2
Author: Karl W Broman ORCID iD [aut, cre], R Core Team [ctb]
Maintainer: Karl W Broman
BugReports: https://github.com/rqtl/qtl2/issues
License: GPL-3
Copyright: Code for Brent's method for univariate function optimization was taken from R 3.2.2 (Copyright 1995, 1996 Robert Gentleman and Ross Ihaka, Copyright 2003-2004 The R Foundation, Copyright 1998-2014 The R Core Team).
URL: https://kbroman.org/qtl2/, https://github.com/rqtl/qtl2
NeedsCompilation: yes
Citation: qtl2 citation info
Materials: README NEWS
CRAN checks: qtl2 results

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