https://maayanlab.cloud/chea3/> or Keenan (2019) <doi:10.1093/nar/gkz446> for further details.">

rChEA3: R Client for the 'ChEA3' Transcription Factor Enrichment API (original) (raw)

Interface to the 'ChEA3' transcription factor enrichment API. 'ChEA3' integrates evidence from ChIP-seq, co-expression, and literature resources to prioritize transcription factors regulating a given set of genes. This package provides convenient R functions to query the API, retrieve ranked results across collections (including integrated scores), and standardize output for downstream analysis in R/Bioconductor workflows. See <https://maayanlab.cloud/chea3/> or Keenan (2019) <doi:10.1093/nar/gkz446> for further details.

Version: 0.2.0
Depends: R (≥ 4.1.0)
Imports: cli, crayon, dplyr, ggplot2, httr, jsonlite, lubridate, rlang, tidyselect, writexl
Suggests: knitr, readxl, rmarkdown, testthat (≥ 3.0.0)
Published: 2025-10-15
DOI: 10.32614/CRAN.package.rChEA3
Author: Christophe Tav ORCID iD [aut, cre]
Maintainer: Christophe Tav <christophe.tav at gmail.com>
BugReports: https://github.com/ckntav/rChEA3/issues
License: MIT + file
URL: https://github.com/ckntav/rChEA3, https://ckntav.github.io/rChEA3/
NeedsCompilation: no
Materials: README, NEWS
CRAN checks: rChEA3 results

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