rwty: R We There Yet? Visualizing MCMC Convergence in Phylogenetics (original) (raw)
Implements various tests, visualizations, and metrics for diagnosing convergence of MCMC chains in phylogenetics. It implements and automates many of the functions of the AWTY package in the R environment, as well as a host of other functions. Warren, Geneva, and Lanfear (2017), <doi:10.1093/molbev/msw279>.
| Version: | 1.0.3 |
|---|---|
| Depends: | R (≥ 3.3.0), ape, ggplot2 |
| Imports: | reshape2, phangorn, coda, viridis, grid, plyr, ggdendro, GGally, parallel, TreeDist |
| Suggests: | knitr, testthat, markdown, rmarkdown, stringi |
| Published: | 2025-03-27 |
| DOI: | 10.32614/CRAN.package.rwty |
| Author: | Dan Warren [aut, cre], Anthony Geneva [aut], Rob Lanfear [aut], Luke Harmon [ctb], April Wright [ctb], Diego Mallo [ctb], Klaus Schliep [ctb], Kelly Luke [ctb], Kendall Michelle [ctb], Smith Martin [ctb] |
| Maintainer: | Dan Warren <dan.l.warren at gmail.com> |
| License: | GPL-2 |
| NeedsCompilation: | no |
| Citation: | rwty citation info |
| Materials: | README |
| CRAN checks: | rwty results |
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