salmonMSE: Management Strategy Evaluation for Salmon Species (original) (raw)
Simulation tools to evaluate the long-term effects of salmon management strategies, including a combination of habitat, harvest, and habitat actions. The stochastic age-structured operating model accommodates complex life histories, including freshwater survival across early life stages, juvenile survival and fishery exploitation in the marine life stage, partial maturity by age class, and fitness impacts of hatchery programs on natural spawning populations. 'salmonMSE' also provides an age-structured conditioning model to develop operating models fitted to data.
| Version: | 0.1.0 |
|---|---|
| Depends: | R (≥ 3.5.0) |
| Imports: | abind, MSEtool (≥ 3.7.2), RTMB, dplyr, ggplot2, grDevices, gsl, methods, reshape2, rlang, rmarkdown, stats, utils |
| Suggests: | ggrepel, rstan, testthat (≥ 3.0.0), tmbstan |
| Published: | 2025-09-23 |
| DOI: | 10.32614/CRAN.package.salmonMSE |
| Author: | Quang Huynh  [aut, cre] |
| Maintainer: | Quang Huynh |
| BugReports: | https://github.com/Blue-Matter/salmonMSE/issues |
| License: | GPL (≥ 3) |
| URL: | https://docs.salmonmse.com/,https://github.com/Blue-Matter/salmonMSE |
| NeedsCompilation: | no |
| Materials: | README |
| CRAN checks: | salmonMSE results |
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