sccca: Single-Cell Correlation Based Cell Type Annotation (original) (raw)
Performing cell type annotation based on cell markers from a unified database. The approach utilizes correlation-based approach combined with association analysis using Fisher-exact and phyper statistical tests (Upton, Graham JG. (1992) <doi:10.2307/2982890>).
| Version: | 0.1.1 |
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| Imports: | Seurat, dplyr, plyr, scales, HGNChelper, openxlsx |
| Published: | 2024-03-13 |
| DOI: | 10.32614/CRAN.package.sccca |
| Author: | Mohamed Soudy [aut, cre], Sophie LE BARS [aut], Enrico Glaab [aut] |
| Maintainer: | Mohamed Soudy |
| License: | GPL (≥ 3) |
| NeedsCompilation: | no |
| CRAN checks: | sccca results |
Documentation:
| Reference manual: | sccca.html , <sccca.pdf> |
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Downloads:
| Package source: | sccca_0.1.1.tar.gz |
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| Windows binaries: | r-devel: sccca_0.1.1.zip, r-release: sccca_0.1.1.zip, r-oldrel: sccca_0.1.1.zip |
| macOS binaries: | r-release (arm64): sccca_0.1.1.tgz, r-oldrel (arm64): sccca_0.1.1.tgz, r-release (x86_64): sccca_0.1.1.tgz, r-oldrel (x86_64): sccca_0.1.1.tgz |
| Old sources: | sccca archive |
Linking:
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