doi:10.1093/sysbio/syy057>.">

secsse: Several Examined and Concealed States-Dependent Speciation and Extinction (original) (raw)

Simultaneously infers state-dependent diversification across two or more states of a single or multiple traits while accounting for the role of a possible concealed trait. See Herrera-Alsina et al. (2019) <doi:10.1093/sysbio/syy057>.

Version:

3.5.0

Depends:

R (≥ 4.2.0)

Imports:

utils, DDD (≥ 5.0), ape, geiger, Rcpp (≥ 1.0.10), RcppParallel, ggplot2, tibble, rlang, treestats

LinkingTo:

Rcpp, RcppParallel, BH (≥ 1.81.0-1)

Suggests:

diversitree, phytools, testthat, subplex, knitr, rmarkdown

Published:

2025-07-24

DOI:

10.32614/CRAN.package.secsse

Author:

Leonel Herrera AlsinaORCID iD [aut], Paul van Els ORCID iD [aut], Thijs Janzen ORCID iD [ctb], Hanno HildenbrandtORCID iD [ctb], Pedro Santos NevesORCID iD [ctb], Rampal S. Etienne ORCID iD [cre, aut]

Maintainer:

Rampal S. Etienne <r.s.etienne at rug.nl>

BugReports:

https://github.com/rsetienne/secsse/issues

License:

GPL (≥ 3) | file

Copyright:

see file

URL:

https://rsetienne.github.io/secsse/,https://github.com/rsetienne/secsse

NeedsCompilation:

yes

SystemRequirements:

C++17

Citation:

secsse citation info

Materials:

NEWS

In views:

Phylogenetics

CRAN checks:

secsse results