spatialTIME: Spatial Analysis of Vectra Immunoflourescent Data (original) (raw)
Visualization and analysis of Vectra Immunoflourescent data. Options for calculating both the univariate and bivariate Ripley's K are included. Calculations are performed using a permutation-based approach presented by Wilson et al. <doi:10.1101/2021.04.27.21256104>.
Version:
1.3.4-5
Depends:
R (≥ 2.10)
Imports:
magrittr, dplyr, tidyr, ggplot2, scales, grDevices, purrr, spatstat.univar, spatstat.geom, spatstat.explore, RColorBrewer, furrr, future, tidyselect, crayon, pbmcapply, dixon, tibble, stringr
Suggests:
knitr, devtools, rmarkdown, testthat (≥ 3.0.0), gridExtra, pheatmap
Published:
2024-06-04
DOI:
10.32614/CRAN.package.spatialTIME
Author:
Jordan Creed [aut], Ram Thapa [aut], Christopher Wilson [aut], Alex Soupir [aut], Oscar Ospina [aut], Julia Wrobel [aut], Brooke Fridley [cph], Fridley Lab [cre]
Maintainer:
Fridley Lab <fridley.lab at moffitt.org>
BugReports:
https://github.com/FridleyLab/spatialTIME/issues
License:
MIT + file
URL:
https://github.com/FridleyLab/spatialTIME
NeedsCompilation:
no
Citation:
Materials:
CRAN checks: