taxonomizr: Functions to Work with NCBI Accessions and Taxonomy (original) (raw)
Functions for assigning taxonomy to NCBI accession numbers and taxon IDs based on NCBI's accession2taxid and taxdump files. This package allows the user to download NCBI data dumps and create a local database for fast and local taxonomic assignment.
| Version: | 0.11.1 | ||
|---|---|---|---|
| Depends: | R (≥ 3.0.0) | ||
| Imports: | RSQLite, R.utils, data.table, curl (≥ 5.0.0) | ||
| Suggests: | testthat, knitr, rmarkdown | ||
| Published: | 2025-03-13 | ||
| DOI: | 10.32614/CRAN.package.taxonomizr | ||
| Author: | Scott Sherrill-Mix [aut, cre] | ||
| Maintainer: | Scott Sherrill-Mix | ||
| BugReports: | https://github.com/sherrillmix/taxonomizr/issues | ||
| License: | GPL-2 | GPL-3 | file [expanded from: GPL (≥ 2) | file LICENSE] |
| URL: | https://github.com/sherrillmix/taxonomizr/ | ||
| NeedsCompilation: | yes | ||
| Materials: | README | ||
| CRAN checks: | taxonomizr results |
Documentation:
| Reference manual: | taxonomizr.html , <taxonomizr.pdf> |
|---|---|
| Vignettes: | taxonomizr usage (source, R code) |
Downloads:
| Package source: | taxonomizr_0.11.1.tar.gz |
|---|---|
| Windows binaries: | r-devel: taxonomizr_0.11.1.zip, r-release: taxonomizr_0.11.1.zip, r-oldrel: taxonomizr_0.11.1.zip |
| macOS binaries: | r-release (arm64): taxonomizr_0.11.1.tgz, r-oldrel (arm64): taxonomizr_0.11.1.tgz, r-release (x86_64): taxonomizr_0.11.1.tgz, r-oldrel (x86_64): taxonomizr_0.11.1.tgz |
| Old sources: | taxonomizr archive |
Reverse dependencies:
| Reverse imports: | DBTC, MetaScope |
|---|
Linking:
Please use the canonical formhttps://CRAN.R-project.org/package=taxonomizrto link to this page.