tidyestimate: A Tidy Implementation of 'ESTIMATE' (original) (raw)
The 'ESTIMATE' package infers tumor purity from expression data as a function of immune and stromal infiltrate, but requires writing of intermediate files, is un-pipeable, and performs poorly when presented with modern datasets with current gene symbols. 'tidyestimate' a fast, tidy, modern reimagination of 'ESTIMATE' (2013) <doi:10.1038/ncomms3612>.
| Version: | 1.1.1 |
|---|---|
| Depends: | R (≥ 4.1.0) |
| Imports: | glue, dplyr, stats, rlang, ggrepel, ggplot2 |
| Suggests: | rmarkdown, knitr |
| Published: | 2023-08-21 |
| DOI: | 10.32614/CRAN.package.tidyestimate |
| Author: | Kai Aragaki  [aut, cre], Paul Roebuck [cph] (Copyright holder of ESTIMATE package), Kosuke Yoshihara [aut] (Author of original ESTIMATE algorithm), Rahulsimham Vegesna [aut] (Author of original ESTIMATE algorithm), Hoon Kim [aut] (Author of original ESTIMATE algorithm), Roel Verhaak [aut] (Author of original ESTIMATE algorithm) |
| Maintainer: | Kai Aragaki |
| BugReports: | https://github.com/KaiAragaki/tidyestimate/issues |
| License: | GPL-2 | GPL-3 [expanded from: GPL (≥ 2)] |
| Copyright: | see file |
| URL: | https://github.com/KaiAragaki/tidyestimate |
| NeedsCompilation: | no |
| Materials: | README, NEWS |
| In views: | Omics |
| CRAN checks: | tidyestimate results |
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