viewpoly: A Shiny App to Visualize Genetic Maps and QTL Analysis in Polyploid Species (original) (raw)
Provides a graphical user interface to integrate, visualize and explore results from linkage and quantitative trait loci analysis, together with genomic information for autopolyploid species. The app is meant for interactive use and allows users to optionally upload different sources of information, including gene annotation and alignment files, enabling the exploitation and search for candidate genes in a genome browser. In its current version, 'VIEWpoly' supports inputs from 'MAPpoly', 'polymapR', 'diaQTL', 'QTLpoly', 'polyqtlR', 'GWASpoly', and 'HIDECAN' packages.
| Version: | 0.4.1 |
|---|---|
| Depends: | R (≥ 4.0) |
| Imports: | shiny (≥ 1.6.0), shinyjs, shinythemes, shinyWidgets, shinydashboard, config (≥ 0.3.1), golem (≥ 0.3.1), JBrowseR, dplyr, tidyr, DT, ggplot2, ggpubr, plotly, vroom, abind, reshape2, markdown, stats, hidecan, purrr |
| Suggests: | testthat (≥ 3.0.0), shinytest, rlang, pkgload, vdiffr |
| Published: | 2024-03-28 |
| DOI: | 10.32614/CRAN.package.viewpoly |
| Author: | Cristiane Taniguti [aut, cre], Gabriel de Siqueira Gesteira [aut], Jeekin Lau [aut], Olivia Angelin-Bonnet [aut], Susan Thomson [ctb], Guilherme da Silva Pereira [ctb], David Byrne [ctb], Zhao-Bang Zeng [ctb], Oscar Riera-Lizarazu [ctb], Marcelo Mollinari [aut] |
| Maintainer: | Cristiane Taniguti |
| BugReports: | https://github.com/mmollina/viewpoly/issues |
| License: | GPL (≥ 3) |
| URL: | https://github.com/mmollina/viewpoly |
| NeedsCompilation: | no |
| Language: | en-US |
| Materials: | README NEWS |
| CRAN checks: | viewpoly results |
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