Internals — pandas 0.16.2 documentation (original) (raw)

This section will provide a look into some of pandas internals.

Indexing¶

In pandas there are a few objects implemented which can serve as valid containers for the axis labels:

• Index: the generic “ordered set” object, an ndarray of object dtype assuming nothing about its contents. The labels must be hashable (and likely immutable) and unique. Populates a dict of label to location in Cython to do O(1) lookups.
• Int64Index: a version of Index highly optimized for 64-bit integer data, such as time stamps
• Float64Index: a version of Index highly optimized for 64-bit float data
• MultiIndex: the standard hierarchical index object
• DatetimeIndex: An Index object with Timestamp boxed elements (impl are the int64 values)
• TimedeltaIndex: An Index object with Timedelta boxed elements (impl are the in64 values)
• PeriodIndex: An Index object with Period elements

These are range generates to make the creation of a regular index easy:

• date_range: fixed frequency date range generated from a time rule or DateOffset. An ndarray of Python datetime objects
• period_range: fixed frequency date range generated from a time rule or DateOffset. An ndarray of Period objects, representing Timespans

The motivation for having an Index class in the first place was to enable different implementations of indexing. This means that it’s possible for you, the user, to implement a custom Index subclass that may be better suited to a particular application than the ones provided in pandas.

From an internal implementation point of view, the relevant methods that anIndex must define are one or more of the following (depending on how incompatible the new object internals are with the Index functions):

• get_loc: returns an “indexer” (an integer, or in some cases a slice object) for a label
• slice_locs: returns the “range” to slice between two labels
• get_indexer: Computes the indexing vector for reindexing / data alignment purposes. See the source / docstrings for more on this
• get_indexer_non_unique: Computes the indexing vector for reindexing / data alignment purposes when the index is non-unique. See the source / docstrings for more on this
• reindex: Does any pre-conversion of the input index then callsget_indexer
• union, intersection: computes the union or intersection of two Index objects
• insert: Inserts a new label into an Index, yielding a new object
• delete: Delete a label, yielding a new object
• drop: Deletes a set of labels
• take: Analogous to ndarray.take

MultiIndex¶

Internally, the MultiIndex consists of a few things: the levels, the integer labels, and the level names:

In [1]: index = MultiIndex.from_product([range(3), ['one', 'two']], names=['first', 'second'])

In [2]: index Out[2]: MultiIndex(levels=[[0, 1, 2], [u'one', u'two']], labels=[[0, 0, 1, 1, 2, 2], [0, 1, 0, 1, 0, 1]], names=[u'first', u'second'])

In [3]: index.levels Out[3]: FrozenList([[0, 1, 2], [u'one', u'two']])

In [4]: index.labels Out[4]: FrozenList([[0, 0, 1, 1, 2, 2], [0, 1, 0, 1, 0, 1]])

In [5]: index.names Out[5]: FrozenList([u'first', u'second'])

You can probably guess that the labels determine which unique element is identified with that location at each layer of the index. It’s important to note that sortedness is determined solely from the integer labels and does not check (or care) whether the levels themselves are sorted. Fortunately, the constructors from_tuples and from_arrays ensure that this is true, but if you compute the levels and labels yourself, please be careful.

Subclassing pandas Data Structures¶

Warning

There are some easier alternatives before considering subclassing pandas data structures.

1. Extensible method chains with pipe
2. Use composition. See here.

This section describes how to subclass pandas data structures to meet more specific needs. There are 2 points which need attention:

1. Override constructor properties.
2. Define original properties

Note

You can find a nice example in geopandas project.

Override Constructor Properties¶

Each data structure has constructor properties to specifying data constructors. By overriding these properties, you can retain defined-classes through pandas data manipulations.

There are 3 constructors to be defined:

• _constructor: Used when a manipulation result has the same dimesions as the original.
• _constructor_sliced: Used when a manipulation result has one lower dimension(s) as the original, such as DataFrame single columns slicing.
• _constructor_expanddim: Used when a manipulation result has one higher dimension as the original, such as Series.to_frame() and DataFrame.to_panel().

Following table shows how pandas data structures define constructor properties by default.

Below example shows how to define SubclassedSeries and SubclassedDataFrame overriding constructor properties.

class SubclassedSeries(Series):

@property
def _constructor(self):
    return SubclassedSeries

@property
def _constructor_expanddim(self):
    return SubclassedDataFrame

class SubclassedDataFrame(DataFrame):

@property
def _constructor(self):
    return SubclassedDataFrame

@property
def _constructor_sliced(self):
    return SubclassedSeries

s = SubclassedSeries([1, 2, 3]) type(s) <class '__main__.SubclassedSeries'>

to_framed = s.to_frame() type(to_framed) <class '__main__.SubclassedDataFrame'>

df = SubclassedDataFrame({'A', [1, 2, 3], 'B': [4, 5, 6], 'C': [7, 8, 9]}) df A B C 0 1 4 7 1 2 5 8 2 3 6 9

type(df) <class '__main__.SubclassedDataFrame'>

sliced1 = df[['A', 'B']] sliced1 A B 0 1 4 1 2 5 2 3 6 type(sliced1) <class '__main__.SubclassedDataFrame'>

sliced2 = df['A'] sliced2 0 1 1 2 2 3 Name: A, dtype: int64 type(sliced2) <class '__main__.SubclassedSeries'>

Define Original Properties¶

To let original data structures have additional properties, you should let pandas knows what properties are added. pandas maps unknown properties to data names overriding __getattribute__. Defining original properties can be done in one of 2 ways:

1. Define _internal_names and _internal_names_set for temporary properties which WILL NOT be passed to manipulation results.
2. Define _metadata for normal properties which will be passed to manipulation results.

Below is an example to define 2 original properties, “internal_cache” as a temporary property and “added_property” as a normal property

class SubclassedDataFrame2(DataFrame):

# temporary properties
_internal_names = DataFrame._internal_names + ['internal_cache']
_internal_names_set = set(_internal_names)

# normal properties
_metadata = ['added_property']

@property
def _constructor(self):
    return SubclassedDataFrame2

df = SubclassedDataFrame2({'A', [1, 2, 3], 'B': [4, 5, 6], 'C': [7, 8, 9]}) df A B C 0 1 4 7 1 2 5 8 2 3 6 9

df.internal_cache = 'cached' df.added_property = 'property'

df.internal_cache cached df.added_property property

properties defined in _internal_names is reset after manipulation

df[['A', 'B']].internal_cache AttributeError: 'SubclassedDataFrame2' object has no attribute 'internal_cache'

properties defined in _metadata are retained

df[['A', 'B']].added_property property