Python Module Index — Planemo 0.75.31.dev0 documentation (original) (raw)

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planemo

planemo.autopygen

planemo.autopygen.argument_parser_conversion

planemo.autopygen.commands

planemo.autopygen.commands.command_utils

planemo.autopygen.param_info

planemo.autopygen.source_file_parsing

planemo.autopygen.source_file_parsing.constants

planemo.autopygen.source_file_parsing.decoy_parser

planemo.autopygen.source_file_parsing.local_module_parsing

planemo.autopygen.source_file_parsing.parser_discovery_and_init

planemo.autopygen.source_file_parsing.parsing_commons

planemo.autopygen.source_file_parsing.parsing_exceptions

planemo.autopygen.source_file_parsing.unknown_names_discovery

planemo.autopygen.xml

planemo.autopygen.xml.xml_utils

planemo.autoupdate

planemo.ci

planemo.cli

planemo.commands

planemo.commands.cmd_autoupdate

planemo.commands.cmd_ci_find_repos

planemo.commands.cmd_ci_find_tools

planemo.commands.cmd_ci_setup

planemo.commands.cmd_clone

planemo.commands.cmd_conda_build

planemo.commands.cmd_conda_env

planemo.commands.cmd_conda_init

planemo.commands.cmd_conda_install

planemo.commands.cmd_conda_search

planemo.commands.cmd_config_init

planemo.commands.cmd_container_register

planemo.commands.cmd_create_alias

planemo.commands.cmd_create_gist

planemo.commands.cmd_database_create

planemo.commands.cmd_database_delete

planemo.commands.cmd_database_list

planemo.commands.cmd_delete_alias

planemo.commands.cmd_docker_build

planemo.commands.cmd_docker_shell

planemo.commands.cmd_dockstore_init

planemo.commands.cmd_docs

planemo.commands.cmd_lint

planemo.commands.cmd_list_alias

planemo.commands.cmd_list_invocations

planemo.commands.cmd_list_repos

planemo.commands.cmd_merge_test_reports

planemo.commands.cmd_mull

planemo.commands.cmd_mulled_init

planemo.commands.cmd_normalize

planemo.commands.cmd_open

planemo.commands.cmd_profile_create

planemo.commands.cmd_profile_delete

planemo.commands.cmd_profile_list

planemo.commands.cmd_project_init

planemo.commands.cmd_pull_request

planemo.commands.cmd_rerun

planemo.commands.cmd_run

planemo.commands.cmd_serve

planemo.commands.cmd_share_test

planemo.commands.cmd_shed_build

planemo.commands.cmd_shed_create

planemo.commands.cmd_shed_diff

planemo.commands.cmd_shed_download

planemo.commands.cmd_shed_init

planemo.commands.cmd_shed_lint

planemo.commands.cmd_shed_serve

planemo.commands.cmd_shed_test

planemo.commands.cmd_shed_update

planemo.commands.cmd_shed_upload

planemo.commands.cmd_syntax

planemo.commands.cmd_test

planemo.commands.cmd_test_reports

planemo.commands.cmd_tool_init

planemo.commands.cmd_training_fill_data_library

planemo.commands.cmd_training_generate_from_wf

planemo.commands.cmd_training_init

planemo.commands.cmd_upload_data

planemo.commands.cmd_workflow_convert

planemo.commands.cmd_workflow_edit

planemo.commands.cmd_workflow_job_init

planemo.commands.cmd_workflow_lint

planemo.commands.cmd_workflow_test_init

planemo.commands.cmd_workflow_test_on_invocation

planemo.commands.cmd_workflow_upload

planemo.conda

planemo.config

planemo.context

planemo.cwl

planemo.cwl.run

planemo.cwl.toil

planemo.database

planemo.database.factory

planemo.database.interface

planemo.database.postgres

planemo.database.postgres_docker

planemo.database.postgres_singularity

planemo.deps

planemo.docker

planemo.engine

planemo.engine.cwltool

planemo.engine.factory

planemo.engine.galaxy

planemo.engine.interface

planemo.engine.test

planemo.engine.toil

planemo.exit_codes

planemo.galaxy

planemo.galaxy.activity

planemo.galaxy.api

planemo.galaxy.config

planemo.galaxy.distro_tools

planemo.galaxy.ephemeris_sleep

planemo.galaxy.profiles

planemo.galaxy.run

planemo.galaxy.serve

planemo.galaxy.test

planemo.galaxy.test.actions

planemo.galaxy.test.structures

planemo.galaxy.workflows

planemo.git

planemo.github_util

planemo.glob

planemo.io

planemo.lint

planemo.linters

planemo.linters.biocontainer_registered

planemo.linters.conda_requirements

planemo.linters.doi

planemo.linters.urls

planemo.linters.xsd

planemo.mulled

planemo.network_util

planemo.options

planemo.reports

planemo.reports.allure

planemo.reports.build_report

planemo.reports.xunit_handler

planemo.runnable

planemo.runnable_resolve

planemo.shed

planemo.shed.diff

planemo.shed.interface

planemo.shed2tap

planemo.shed2tap.base

planemo.shed_lint

planemo.templates

planemo.test

planemo.test.data

planemo.test.results

planemo.tool_builder

planemo.tool_lint

planemo.tools

planemo.training

planemo.training.tool_input

planemo.training.topic

planemo.training.tutorial

planemo.training.utils

planemo.virtualenv

planemo.workflow_lint

planemo.xml

planemo.xml.diff

planemo.xml.validation