GOstats (original) (raw)
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, seeGOstats.
Tools for manipulating GO and microarrays.
Bioconductor version: 2.12
A set of tools for interacting with GO and microarray data. A variety of basic manipulation tools for graphs, hypothesis testing and other simple calculations.
Author: R. Gentleman and S. Falcon
Maintainer: Bioconductor Package Maintainer
Citation (from within R, enter citation("GOstats")):
Installation
To install this package, start R and enter:
try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R") biocLite("GOstats")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("GOstats")
| Hypergeometric tests for less common model organisms | ||
|---|---|---|
| R Script | Hypergeometric Tests Using GOstats | |
| R Script | Visualizing Data Using GOstats | |
| Reference Manual |
Details
| biocViews | Annotation, Bioinformatics, GO, MultipleComparisons, Software |
|---|---|
| Version | 2.26.0 |
| In Bioconductor since | BioC 1.6 (R-2.1) or earlier (> 11 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), Biobase(>= 1.15.29), Category(>= 2.3.26), graph |
| Imports | AnnotationDbi(>= 0.0.89), Biobase(>= 1.15.29), Category(>= 2.3.26), GO.db(>= 1.13.0), RBGL, annotate(>= 1.13.2), graph(>= 1.15.15), methods, stats, AnnotationForge |
| LinkingTo | |
| Suggests | hgu95av2.db(>= 1.13.0), ALL, GO.db(>= 1.13.0), annotate, multtest, genefilter, RColorBrewer, Rgraphviz, xtable, SparseM, GSEABase, geneplotter, org.Hs.eg.db, RUnit, BiocGenerics |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | attract, MineICA |
| Imports Me | affycoretools, attract, categoryCompare, ReportingTools |
| Suggests Me | BiocCaseStudies, Category, eisa, GSEAlm, HTSanalyzeR, MineICA, MLP, MmPalateMiRNA, oneChannelGUI, phenoDist, safe |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | GOstats_2.26.0.tar.gz |
|---|---|
| Windows Binary | GOstats_2.26.0.zip |
| Mac OS X 10.6 (Snow Leopard) | GOstats_2.26.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/GOstats/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/GOstats/ |
| Package Downloads Report | Download Stats |