OTUbase (original) (raw)
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, seeOTUbase.
Provides structure and functions for the analysis of OTU data
Bioconductor version: 2.12
Provides a platform for Operational Taxonomic Unit based analysis
Author: Daniel Beck, Matt Settles, and James A. Foster
Maintainer: Daniel Beck
Citation (from within R, enter citation("OTUbase")):
Installation
To install this package, start R and enter:
try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R") biocLite("OTUbase")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("OTUbase")
Details
| biocViews | Bioinformatics, DataImport, HighThroughputSequencingData, Software |
|---|---|
| Version | 1.10.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) (5.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.9.0), methods, ShortRead(>= 1.4.0), Biobase, vegan |
| Imports | Biostrings, ShortRead, IRanges |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | mcaGUI |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | OTUbase_1.10.0.tar.gz |
|---|---|
| Windows Binary | OTUbase_1.10.0.zip |
| Mac OS X 10.6 (Snow Leopard) | OTUbase_1.10.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/OTUbase/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/OTUbase/ |
| Package Downloads Report | Download Stats |