beadarraySNP (original) (raw)
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, seebeadarraySNP.
Normalization and reporting of Illumina SNP bead arrays
Bioconductor version: 2.12
Importing data from Illumina SNP experiments and performing copy number calculations and reports.
Author: Jan Oosting
Maintainer: Jan Oosting <j.oosting at lumc.nl>
Citation (from within R, enter citation("beadarraySNP")):
Installation
To install this package, start R and enter:
try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R") biocLite("beadarraySNP")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("beadarraySNP")
Details
| biocViews | CopyNumberVariants, DataImport, GeneticVariability, Preprocessing, SNP, Software, TwoChannel |
|---|---|
| Version | 1.26.0 |
| In Bioconductor since | BioC 1.9 (R-2.4) (9.5 years) |
| License | GPL-2 |
| Depends | methods, Biobase(>= 2.5.5), quantsmooth |
| Imports | |
| LinkingTo | |
| Suggests | aCGH, affy, limma, snapCGH, beadarray, DNAcopy |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | beadarraySNP_1.26.0.tar.gz |
|---|---|
| Windows Binary | beadarraySNP_1.26.0.zip |
| Mac OS X 10.6 (Snow Leopard) | beadarraySNP_1.26.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/beadarraySNP/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/beadarraySNP/ |
| Package Downloads Report | Download Stats |