chipseq (original) (raw)
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, seechipseq.
chipseq: A package for analyzing chipseq data
Bioconductor version: 2.12
Tools for helping process short read data for chipseq experiments
Author: Deepayan Sarkar, Robert Gentleman, Michael Lawrence, Zizhen Yao
Maintainer: Bioconductor Package Maintainer
Citation (from within R, enter citation("chipseq")):
Installation
To install this package, start R and enter:
try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R") biocLite("chipseq")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("chipseq")
Details
| biocViews | ChIPseq, Software |
|---|---|
| Version | 1.10.1 |
| In Bioconductor since | BioC 2.5 (R-2.10) (6.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), methods, BiocGenerics(>= 0.1.0), IRanges(>= 1.13.4), GenomicRanges(>= 1.7.7), BSgenome, ShortRead |
| Imports | methods, BiocGenerics, IRanges, BSgenome, GenomicRanges, lattice, ShortRead, stats |
| LinkingTo | |
| Suggests | GenomicFeatures, BSgenome.Mmusculus.UCSC.mm9, TxDb.Mmusculus.UCSC.mm9.knownGene |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | PING |
| Imports Me | HTSeqGenie |
| Suggests Me | ggbio, oneChannelGUI |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | chipseq_1.10.1.tar.gz |
|---|---|
| Windows Binary | chipseq_1.10.1.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | chipseq_1.10.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/chipseq/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/chipseq/ |
| Package Downloads Report | Download Stats |