clippda (original) (raw)
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, seeclippda.
A package for the clinical proteomic profiling data analysis
Bioconductor version: 2.12
Methods for the nalysis of data from clinical proteomic profiling studies. The focus is on the studies of human subjects, which are often observational case-control by design and have technical replicates. A method for sample size determination for planning these studies is proposed. It incorporates routines for adjusting for the expected heterogeneities and imbalances in the data and the within-sample replicate correlations.
Author: Stephen Nyangoma
Maintainer: Stephen Nyangoma <s.o.nyangoma at bham.ac.uk>
Citation (from within R, enter citation("clippda")):
Installation
To install this package, start R and enter:
try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R") biocLite("clippda")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("clippda")
Details
| biocViews | Bioinformatics, DataPreprocessing, DifferentialExpression, MultipleComparisons, OneChannel, Proteomics, SampleSize, Software |
|---|---|
| Version | 1.10.0 |
| In Bioconductor since | BioC 2.5 (R-2.10) (6.5 years) |
| License | GPL (>=2) |
| Depends | R (>= 2.13.1), limma, statmod, rgl, lattice, scatterplot3d, graphics, grDevices, stats, utils, Biobase, tools, methods |
| Imports | |
| LinkingTo | |
| Suggests | |
| SystemRequirements | |
| Enhances | |
| URL | http://www.cancerstudies.bham.ac.uk/crctu/CLIPPDA.shtml |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | clippda_1.10.0.tar.gz |
|---|---|
| Windows Binary | clippda_1.10.0.zip |
| Mac OS X 10.6 (Snow Leopard) | clippda_1.10.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/clippda/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/clippda/ |
| Package Downloads Report | Download Stats |