clusterProfiler (original) (raw)
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, seeclusterProfiler.
statistical analysis and visulization of functional profiles for genes and gene clusters
Bioconductor version: 2.12
The package implements methods to analyze and visualize functional profiles (GO and KEGG) of gene and gene clusters.
Author: Guangchuang Yu, Li-Gen Wang
Maintainer: Guangchuang Yu
Citation (from within R, enter citation("clusterProfiler")):
Installation
To install this package, start R and enter:
try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R") biocLite("clusterProfiler")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("clusterProfiler")
| R Script | An introduction to clusterProfiler | |
|---|---|---|
| clusterProfiler_for_unsupported_organisms.pdf | ||
| omics2012.pdf | ||
| Reference Manual | ||
| Text | NEWS |
Details
| biocViews | Clustering, GO, GeneSetEnrichment, MultipleComparisons, Pathways, Software, Visualization |
|---|---|
| Version | 1.8.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10), ggplot2 |
| Imports | methods, stats4, DBI, plyr, AnnotationDbi, GO.db, KEGG.db, org.Hs.eg.db, DOSE |
| LinkingTo | |
| Suggests | GOSemSim, ReactomePA |
| SystemRequirements | |
| Enhances | |
| URL | http://online.liebertpub.com/doi/abs/10.1089/omi.2011.0118 |
| Depends On Me | |
| Imports Me | |
| Suggests Me | DOSE, GOSemSim, ReactomePA |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | clusterProfiler_1.8.0.tar.gz |
|---|---|
| Windows Binary | clusterProfiler_1.8.0.zip |
| Mac OS X 10.6 (Snow Leopard) | clusterProfiler_1.8.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/clusterProfiler/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/clusterProfiler/ |
| Package Downloads Report | Download Stats |