cqn (original) (raw)
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, seecqn.
Conditional quantile normalization
Bioconductor version: 2.12
A normalization tool for RNA-Seq data, implementing the conditional quantile normalization method.
Author: Jean (Zhijin) Wu, Kasper Daniel Hansen
Maintainer: Kasper Daniel Hansen
Citation (from within R, enter citation("cqn")):
Installation
To install this package, start R and enter:
try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R") biocLite("cqn")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("cqn")
Details
| biocViews | DifferentialExpression, Preprocessing, RNAseq, Software |
|---|---|
| Version | 1.6.0 |
| In Bioconductor since | BioC 2.9 (R-2.14) (4.5 years) |
| License | Artistic-2.0 |
| Depends | R (>= 2.10.0), mclust, nor1mix, stats, preprocessCore, splines, quantreg |
| Imports | splines |
| LinkingTo | |
| Suggests | scales, edgeR |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | |
| Imports Me | tweeDEseq |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | cqn_1.6.0.tar.gz |
|---|---|
| Windows Binary | cqn_1.6.0.zip |
| Mac OS X 10.6 (Snow Leopard) | cqn_1.6.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/cqn/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/cqn/ |
| Package Downloads Report | Download Stats |