manta (original) (raw)
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, seemanta.
Microbial Assemblage Normalized Transcript Analysis
Bioconductor version: 2.12
Tools for robust comparative metatranscriptomics.
Author: Ginger Armbrust, Adrian Marchetti, David M. Schruth
Maintainer: Chris Berthiaume , Adrian Marchetti
Citation (from within R, enter citation("manta")):
Installation
To install this package, start R and enter:
try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R") biocLite("manta")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("manta")
| R Script | manta | |
|---|---|---|
| Reference Manual | ||
| Text | NEWS | |
| Text | LICENSE |
Details
| biocViews | Bioinformatics, DataImport, DifferentialExpression, GeneExpression, Genetics, HighThroughputSequencing, QualityControl, RNAseq, Software, Visualization |
|---|---|
| Version | 1.6.1 |
| In Bioconductor since | BioC 2.10 (R-2.15) (4 years) |
| License | Artistic-2.0 |
| Depends | R (>= 1.8.0), methods, edgeR(>= 2.5.13) |
| Imports | Hmisc |
| LinkingTo | |
| Suggests | RSQLite, plotrix |
| SystemRequirements | |
| Enhances | |
| URL | http://manta.ocean.washington.edu/ |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | manta_1.6.1.tar.gz |
|---|---|
| Windows Binary | manta_1.6.1.zip |
| Mac OS X 10.6 (Snow Leopard) | manta_1.6.1.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/manta/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/manta/ |
| Package Downloads Report | Download Stats |