rnaSeqMap (original) (raw)
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, seernaSeqMap.
rnaSeq secondary analyses
Bioconductor version: 2.12
The rnaSeqMap library provides classes and functions to analyze the RNA-sequencing data using the coverage profiles in multiple samples at a time
Author: Anna Lesniewska ; Michal Okoniewski
Maintainer: Michal Okoniewski
Citation (from within R, enter citation("rnaSeqMap")):
Installation
To install this package, start R and enter:
try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R") biocLite("rnaSeqMap")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("rnaSeqMap")
Details
| biocViews | Annotation, Bioinformatics, DifferentialExpression, GeneExpression, HighThroughputSequencing, RNAseq, ReportWriting, SAGE, Software, Transcription, Visualization |
|---|---|
| Version | 2.14.0 |
| In Bioconductor since | BioC 2.7 (R-2.12) (5.5 years) |
| License | GPL-2 |
| Depends | R (>= 2.11.0), methods, xmapcore, Biobase, Rsamtools |
| Imports | GenomicRanges, IRanges, edgeR, DESeq, DBI, RMySQL (>= 0.6-0) |
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Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | rnaSeqMap_2.14.0.tar.gz |
|---|---|
| Windows Binary | |
| Mac OS X 10.6 (Snow Leopard) | rnaSeqMap_2.14.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/rnaSeqMap/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/rnaSeqMap/ |
| Package Downloads Report | Download Stats |