snpStats (original) (raw)
This package is for version 2.12 of Bioconductor; for the stable, up-to-date release version, seesnpStats.
SnpMatrix and XSnpMatrix classes and methods
Bioconductor version: 2.12
Classes and statistical methods for large SNP association studies, extending the snpMatrix package (now removed)
Author: David Clayton
Maintainer: David Clayton
Citation (from within R, enter citation("snpStats")):
Installation
To install this package, start R and enter:
try http:// if https:// URLs are not supported
source("https://bioconductor.org/biocLite.R") biocLite("snpStats")
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("snpStats")
| R Script | Data input | |
|---|---|---|
| R Script | Imputation and meta-analysis | |
| R Script | LD statistics | |
| R Script | Principal components analysis | |
| R Script | snpMatrix-differences | |
| R Script | snpStats introduction | |
| R Script | TDT tests | |
| Reference Manual |
Details
| biocViews | GeneticVariability, Microarray, SNP, Software |
|---|---|
| Version | 1.10.0 |
| In Bioconductor since | BioC 2.8 (R-2.13) (5 years) |
| License | GPL-3 |
| Depends | R (>= 2.10.0), survival, methods, Matrix |
| Imports | graphics, grDevices, methods, stats, survival, utils, Matrix, BiocGenerics |
| LinkingTo | |
| Suggests | hexbin |
| SystemRequirements | |
| Enhances | |
| URL | |
| Depends On Me | GGBase, GGdata, ggtut, gwascat |
| Imports Me | FunciSNP, GGtools |
| Suggests Me | crlmm, GWASTools, VariantAnnotation |
| Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
| Package Source | snpStats_1.10.0.tar.gz |
|---|---|
| Windows Binary | snpStats_1.10.0.zip (32- & 64-bit) |
| Mac OS X 10.6 (Snow Leopard) | snpStats_1.10.0.tgz |
| Subversion source | (username/password: readonly) |
| Git source | https://github.com/Bioconductor-mirror/snpStats/tree/release-2.12 |
| Package Short Url | http://bioconductor.org/packages/snpStats/ |
| Package Downloads Report | Download Stats |