Organism.dplyr (development version) (original) (raw)
This is the development version of Organism.dplyr; for the stable release version, seeOrganism.dplyr.
dplyr-based Access to Bioconductor Annotation Resources
Bioconductor version: Development (3.21)
This package provides an alternative interface to Bioconductor 'annotation' resources, in particular the gene identifier mapping functionality of the 'org' packages (e.g., org.Hs.eg.db) and the genome coordinate functionality of the 'TxDb' packages (e.g., TxDb.Hsapiens.UCSC.hg38.knownGene).
Author: Martin Morgan [aut, cre], Daniel van Twisk [ctb], Yubo Cheng [aut]
Maintainer: Martin Morgan <martin.morgan at roswellpark.org>
Citation (from within R, enter citation("Organism.dplyr")
):
Installation
To install this package, start R (version "4.5") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
# The following initializes usage of Bioc devel
BiocManager::install(version='devel')
BiocManager::install("Organism.dplyr")
For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("Organism.dplyr")
Details
biocViews | Annotation, GenomeAnnotation, Sequencing, Software |
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Version | 1.35.0 |
In Bioconductor since | BioC 3.5 (R-3.4) (7.5 years) |
License | Artistic-2.0 |
Depends | R (>= 3.4), dplyr (>= 0.7.0), AnnotationFilter(>= 1.1.3) |
Imports | RSQLite, S4Vectors, GenomeInfoDb, IRanges, GenomicRanges, GenomicFeatures, AnnotationDbi, rlang, methods, tools, utils, BiocFileCache, DBI, dbplyr, tibble |
System Requirements | |
URL | |
Bug Reports | https://github.com/Bioconductor/Organism.dplyr/issues |
See More
Suggests | org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, org.Mm.eg.db, TxDb.Mmusculus.UCSC.mm10.ensGene, testthat, knitr, rmarkdown, magick, BiocStyle, ggplot2 |
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Linking To | |
Enhances | |
Depends On Me | annotation |
Imports Me | Ularcirc |
Suggests Me | |
Links To Me | |
Build Report | Build Report |
Package Archives
Follow Installation instructions to use this package in your R session.
Source Package | Organism.dplyr_1.35.0.tar.gz |
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Windows Binary (x86_64) | Organism.dplyr_1.35.0.zip |
macOS Binary (x86_64) | Organism.dplyr_1.35.0.tgz |
macOS Binary (arm64) | Organism.dplyr_1.35.0.tgz |
Source Repository | git clone https://git.bioconductor.org/packages/Organism.dplyr |
Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/Organism.dplyr |
Bioc Package Browser | https://code.bioconductor.org/browse/Organism.dplyr/ |
Package Short Url | https://bioconductor.org/packages/Organism.dplyr/ |
Package Downloads Report | Download Stats |