Data_02 - Yeast - Orbitrap - Wild-type grown in rich medium (YPD), harvested in log-phase (original) (raw)

• publication: Ramakrishnan, Vogel, Prince, Li, Penalva, Myers, Marcotte, Miranker. Bioinformatics. Under review
• further information: MSpresso Supplementary website
• main authors (data): John Prince (Colorado, jtprince at gmail.com), Zhihua Li (UT Austin, zhihuali@mail.utexas.edu)
• experimental description
• files:
  • eight sets of RAW files for 8 injections
  • eight sets of SRF files as output from SEQUEST search
  • eight sets of PEPXML files as input for Peptide-/Protein-Prophet
  • PROTXML, PROTLST, APEX, BIGPARSE files for combined analysis of all 8 injections
    At 5% FDR, TPP detects 1415 proteins.
• other files:
  • yeast FASTA sequence
  • APEX Oi values for yeast run on LTQ Orbitrap
• dataset is part of the gold standard of protein expression in yeast

C. Vogel, cvogel at mail utexas edu
May 2009