chewbbaca - bioconda | Anaconda.org (original) (raw)

To install this package, run one of the following:

$conda install bioconda::chewbbaca

Version

3.5.4

3.5.3

3.5.2

3.5.1

3.5.0

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chewBBACA is a comprehensive pipeline including a set of functions for the creation and validation of whole genome and core genome MultiLocus Sequence Typing (wg/cgMLST) schemas, providing an allele calling algorithm based on Blast Score Ratio that can be run in multiprocessor settings and a set of functions to visualize and validate allele variation in the loci.

Summary

A complete suite for gene-by-gene schema creation and strain identification.

Unsupported Platforms

linux-64 Last supported version: 2.0.16

macOS-64 Last supported version: 2.0.16