Hassan Azzazy | American University in Cairo (original) (raw)
Papers by Hassan Azzazy
Discover Nano, Feb 14, 2024
Chemoresistance and severe toxicities represent major drawbacks of chemotherapy. Natural extracts... more Chemoresistance and severe toxicities represent major drawbacks of chemotherapy. Natural extracts, including the essential oils of Pistacia lentiscus (PLEO), exhibit substantial anticancer and anti-inflammatory activities where different cancers are reported to dramatically recess following targeting with PLEO. PLEO has promising antimicrobial, anticancer, and anti-inflammatory properties. However, the therapeutic properties of PLEO are restricted by limited stability, bioavailability, and targeting ability. PLEO nanoformulation can maximize their physicochemical and therapeutic properties, overcoming their shortcomings. Hence, PLEO was extracted and its chemical composition was determined by GC-MS. PLEO and 5-Fluorouracil (5FU) were electrospun into poly-ε-caprolactone nanofibers (PCL-NFs), of 290.71 nm to 680.95 nm diameter, to investigate their anticancer and potential synergistic activities against triple-negative breast cancer cells (MDA-MB-231), human adenocarcinoma breast cancer cells (MCF-7), and human skin melanoma cell line (A375). The prepared nanofibers (NFs) showed enhanced thermal stability and remarkable physical integrity and tensile strength. Biodegradability studies showed prolonged stability over 42 days, supporting the NFs use as a localized therapy of breast tissues (postmastectomy) or melanoma. Release studies revealed sustainable release behaviors over 168 h, with higher released amounts of 5FU and PLEO at pH 5.4, indicating higher targeting abilities towards cancer tissues. NFs loaded with PLEO showed strong antioxidant properties. Finally, NFs loaded with either PLEO or 5FU depicted greater anticancer activities compared to free compounds. The highest anticancer activities were observed with NFs co-loaded with PLEO and 5FU. The developed 5FU-PLEO-PCL-NFs hold potential as a local treatment of breast cancer tissues (postmastectomy) and melanoma to minimize their possible recurrence.
RSC Sustainability, Dec 31, 2022
Cellulose is a widely available and renewable biopolymer that can be extracted from different nat... more Cellulose is a widely available and renewable biopolymer that can be extracted from different natural sources such as plants, and bacteria. Rice husk is of special interest as a source of cellulose, as it is abundant and has a high cellulose content. The extraction of cellulose from rice husk has traditionally been a multi-step procedure that is timeconsuming and involves the use of harsh chemicals. However, in this study, a one-step facile method was developed and optimized for the extraction of cellulose from rice husks. The process involved adjusting the ratio of sodium hypochlorite solution to the mass of solid rice husk and the progressive removal of non-cellulosic constituents was confirmed via scanning electron microscopy (SEM), and Maule lignin test. The extracted cellulose was then incorporated into glass ionomer cement (GIC) for dental applications. The mechanical properties of the GIC have increased in G12 and G18 vs. an observable decrease in G21 (p = 0.02 and p = 0.01, respectively), including increased compressive strength and stiffness. The addition of 3% cellulose extracted using C12 conditions (1 husk : 12 hypochlorite for 6 h) to GIC has increased GIC mechanical strength by 130% as compared to control GIC. The addition of 1% cellulose extracted using C18 conditions (1 husk : 18 hypochlorite for 6 h) to GIC has increased GIC mechanical strength by 58.5% as compared to the control. In conclusion, cellulose can be extracted from rice husks using a one-step facile method, and its incorporation into GIC can enhance its mechanical properties and improve its potential use for dental applications.
Social Science Research Network, 2022
Omics A Journal of Integrative Biology, May 1, 2021
ACS applied nano materials, Feb 28, 2023
ACS omega, Apr 28, 2022
Daily used cosmetics may contain high levels of heavy metals which are added to improve the quali... more Daily used cosmetics may contain high levels of heavy metals which are added to improve the quality and shine of cosmetics but represent a threat to human health. In this report, powder- and paper-based optical nanosensors using mesoporous silica nanospheres as carriers were designed for determination of Co2+ and Cd2+ in commonly used cosmetics. Powder optical chemosensors (POCs) were prepared via direct decoration of optical probes into a porous carrier. Paper-based chemosensors (PBCs) were designed via adsorbing the organic chromophore onto filter papers treated with mesoporous silica. POCs and PBCs were constructed with thick decoration of optical probes, leading to the formation of active surface centers for monitoring of Co2+ and Cd2+ in cosmetic products. The uniform structures of POCs and PBCs have resulted in selective sensing and low detection limits up to parts per billion, wide detection range determination, and fast response (on the order of seconds). Digital image colorimetric analysis (DICA) was used to quantify the color of PBCs and deduce the corresponding concentrations of Co2+ and Cd2+ using calibration curves. DICA data correlated well with that obtained from UV–vis spectrophotometry. The developed POCs and PBCs showed wide detection ranges of metal ions and a considerably low detection limit under optimal analysis conditions. The low limit of detection of Co2+ and Cd2+ ions using POCs was 6.7 × 10–9 and 3.5 × 10–9 M, respectively. To the best of our knowledge, this is the first time simple PBCs have been designed for monitoring Co2+ and Cd2+ with detection limits of 2.2 × 10–7 and 1.3 × 10–7 M. A limited amount of manufactured POCs (about 20 mg) were used for all measurements, and commercial filter paper treated with mesoporous nanosphere silica was used for sensing Co2+ and Cd2+ ions. The developed optical chemosensors had short regeneration times and exhibited high stability and surface functionality and are capable of monitoring Co2+ and Cd2+ in various cosmetic products.
Current Issues in Molecular Biology, Jun 8, 2023
This article is an open access article distributed under the terms and conditions of the Creative... more This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY
Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, Sep 1, 2022
Screening for microbial contaminants in fresh produce is a lengthy process relative to their shor... more Screening for microbial contaminants in fresh produce is a lengthy process relative to their short shelf-life. The aim of this study is to develop a comprehensive assay which employs FTIR and spectral classification algorithm for detection of bacterial contamination of fresh produce. The procedure starts by soaking a sample of the fresh produce in broth for 5 h. Then, magnetic nanoparticles are added to capture bacteria which are then collected and prepared for FTIR scanning. The generated FTIR spectra are compared against an in-house database of different bacterial species (n = 6). The ability of the database to discriminate contaminated and uncontaminated samples and to identify the bacterial species was assessed. The compatibility of the FTIR procedures with subsequent DNA extraction and PCR was tested. The developed procedure was applied for assessment of bacterial contamination in fresh produce samples from the market (n = 78). Results were compared to the conventional culture methods. The generated FTIR database coupled to spectral classification was able to detect bacterial contamination with overall accuracy exceeding 90%. The sample processing did not alter the integrity of the bacterial DNA which was suitable for PCR. On application to fresh produce samples collected from the market, the developed method was able to detect bacterial contamination with 94% concordance with the culture method. In conclusion, the developed procedure can be applied for fast detection of microbial contamination in fresh produce with comparable accuracy to conventional microbiological assays and is compatible with subsequent molecular assays.
Humana Press eBooks, Oct 4, 2007
Ethanol, commonly also referred to as alcohol, is widely used as well as abused, and measurement ... more Ethanol, commonly also referred to as alcohol, is widely used as well as abused, and measurement of alcohol is a common test in clinical toxicology and forensic laboratories. Although blood alcohol measurement is most commonly used, alcohol can also be measured in breath, urine, saliva and vitreous humor. Whole blood alcohol levels are lower than serum alcohol levels, and the value depends on the hematocrit. Although enzymatic assays based on capability of alcohol dehydrogenase to convert alcohol to acetaldehyde is widely used for rapid determination of serum or plasma alcohol concentrations, values may be elevated in postmortem serum as well as in patients with highly elevated lactate and lactate dehydrogenase level in blood. Gas chromatographic methods widely used for determination of forensic alcohol are considered as the reference method, and there are also few reports of using gas chromatography combined with mass spectrometry for determination of alcohol concentrations in biological matrix.
Nanoscale advances, 2022
Please note that technical editing may introduce minor changes to the text and/or graphics, which... more Please note that technical editing may introduce minor changes to the text and/or graphics, which may alter content. The journal's standard Terms & Conditions and the Ethical guidelines still apply. In no event shall the Royal Society of Chemistry be held responsible for any errors or omissions in this Accepted Manuscript or any consequences arising from the use of any information it contains.
Microchemical Journal, Sep 1, 2018
Analytical Biochemistry, Nov 1, 2020
This is a PDF file of an article that has undergone enhancements after acceptance, such as the ad... more This is a PDF file of an article that has undergone enhancements after acceptance, such as the addition of a cover page and metadata, and formatting for readability, but it is not yet the definitive version of record. This version will undergo additional copyediting, typesetting and review before it is published in its final form, but we are providing this version to give early visibility of the article. Please note that, during the production process, errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain.
Computers in Biology and Medicine, Jul 1, 2021
Corona Virus 2019 Disease (COVID-19) is a rapidly emerging pandemic caused by a newly discovered ... more Corona Virus 2019 Disease (COVID-19) is a rapidly emerging pandemic caused by a newly discovered beta coronavirus, called Sever Acute Respiratory Syndrome Coronavirus 2 (SARS CoV-2). SARS CoV-2 is an enveloped, single stranded RNA virus that depends on RNA-dependent RNA polymerase (RdRp) to replicate. Therefore, SARS CoV-2 RdRp is considered as a promising target to cease virus replication. SARS CoV-2 polymerase shows high structural similarity to Hepatitis C Virus-1b genotype (HCV-1b) polymerase. Arising from the high similarity between SARS CoV-2 RdRp and HCV NS5B, we utilized the reported small-molecule binders to the palm subdomain of HCV NS5B (genotype 1b) to generate a high-quality DEKOIS 2.0 benchmark set and conducted a benchmarking analysis against HCV NS5B. The three highly cited and publicly available docking tools AutoDock Vina, FRED and PLANTS were benchmarked. Based on the benchmarking results and analysis via pROC-Chemotype plot, PLANTS showed the best screening performance and can recognize potent binders at the early enrichment. Accordingly, we used PLANTS in a prospective virtual screening to repurpose both the FDA-approved drugs (DrugBank) and the HCV-NS5B palm subdomain binders (BindingDB) for SARS CoV-2 RdRp palm subdomain. Further assessment by molecular dynamics simulations for 50 ns recommended diosmin (from DrugBank) and compound 3 (from BindingDB) to be the best potential binders to SARS CoV-2 RdRp palm subdomain. The best predicted compounds are recommended to be biologically investigated against COVID-19. In conclusion, this work provides in-silico analysis to propose possible SARS CoV-2 RdRp palm subdomain binders recommended as a remedy for COVID-19. Up-to-our knowledge, this study is the first to propose binders at the palm subdomain of SARS CoV2 RdRp. Furthermore, this study delivers an example of how to make use of a high quality custom-made DEKOIS 2.0 benchmark set as a procedure to elevate the virtual screening success rate against a vital target of the rapidly emerging pandemic.
Biotechnology Letters, Dec 10, 2019
Citrullus colocynth (CTC) is a wild medicinal plant with proven antimicrobial activity. The aim o... more Citrullus colocynth (CTC) is a wild medicinal plant with proven antimicrobial activity. The aim of this study is to investigate the use of its aqueous extract in producing magnetic iron oxide nanoparticles (MNPs) with improved antimicrobial activity. The cold and hot aqueous extract of seed and pulp parts of CTC, respectively, were used to produce MNPs. The particles were characterized by transmission electron microscope, energy dispersion x-ray, FTIR and their surface charge were measured. The antimicrobial activity of the produced particles was assessed against two Gram positive (Bacillus subtillis and Staphylococcus aureus) and two Gram negative (Escherichia coli and Pseudomonas aeruginosa) bacteria and well as against Candida albicans. MNPs synthesized using cold seed extract (S-MNP) and pulp extract (P-MNP) were spherical in shape. The size distribution was more uniform in the S-MNP (6–15 nm) compared to the P-MNP (12–45 nm). Both particles showed comparable anti-microbial potential against the tested microorganisms. At a concentration range of 0.48–1000 μg/mL, S-MNP inhibited bacterial growth by 16.0–99.0% and 10.0–91.0%; while P-MNP inhibition was 11.0–100.0% and 11.0–99.0% for Gram positive and negative bacteria; respectively. Candida albicans was the least affected microorganism with maximum inhibition of 63–88% after treatment with S-MNP and P-MNP (1 mg/mL), respectively. The aqueous extract of CTC can be used for synthesis of MNPs with antimicrobial activity. The described procedures are simple and can be modified for large scale green synthesis of MNPs.
Analytical Chemistry Letters, Mar 3, 2020
The interest in lactobionic acid (LA) in nano-pharmaceuticals is growing due to its selective aff... more The interest in lactobionic acid (LA) in nano-pharmaceuticals is growing due to its selective affinity to liver cells. Currently there is no suitable analytical method for the determination of LA in nanoparticles or other matrices. There is a need for a quantitative assay to accurately determine LA in nano-particles as well as in other matrices. In this study, a HILIC-MS/MS method was developed and validated for the analysis of LA. The method was applied for the assessment of chitosan nanoparticles (CNP) functionalization. The developed method was valid for the determination of LA with a LOD and LOQ of 1 and 5 ng/mL, respectively. The method was applied for the determination of unreacted LA after nanoparticle functionalization and revealed that a loading-capacity of 24 % was achieved. In conclusion, the developed method is the first report for the quantitative determination of LA functionalization on nanoparticles. The method can be directly applied in the qualitycontrol applications for the assessment of nanoparticle functionalization with LA and may be extended for quality control applications of other LA-containing products.
ACS omega, Apr 11, 2022
The present study describes the development of multifunctional hemostatic sponges to control blee... more The present study describes the development of multifunctional hemostatic sponges to control bleeding. Chitosan (Ch) and poly(vinyl alcohol) (PVA) were selected as the basic polymeric matrix [Ch/PVA] for sponges. Glycerol and citric acid were used as crosslinkers [Ch/PVA/G(Cl)] to enhance the mechanical properties of the developed sponges. Ciprofloxacin (AB) was added to the developed sponge to impart antibacterial activity. Hydroxyapatite (HA) was also added, which would make the sponge suitable for bone surgery. Among the developed sponges, the Ch/PVA/G(Cl)-HA-AB sponge demonstrated enhanced cell viability, mechanical properties, and strong antimicrobial effect against Escherichia coli, Pseudomonas aeruginosa, and Staphylococcus aureus, in addition to platelet aggregation activity. The addition of ciprofloxacin and hydroxyapatite promotes a unique synergistic effect of antimicrobial activity and hemostasis. Thus, the present study introduces Ch/PVA/G(Cl)-HA-AB, a multifunctional hemostatic sponge that would be suitable for bone surgical applications.
Meta Gene, Dec 1, 2020
Background & aim: Circulatory miRNAs have emerged as promising non-invasive biomarkers for early ... more Background & aim: Circulatory miRNAs have emerged as promising non-invasive biomarkers for early diagnosis and prognosis of various disease stages. In this study, we investigated expression profiles for circulatory miRNAs (21, 122 and 155) in Egyptian patients with HCV mediated hepatic disorders. Methods: Expression profiles were assessed in plasma of 40 healthy subjects, 37 chronic HCV (CHC), 39 cirrhotic and 40 hepatocellular carcinoma (HCC) patients using RT-PCR. Results: miR-21 and miR-122 levels were significantly up-regulated in HCC in comparison to all other groups with log2 values of 5.45 and 6 respectively. There was also significant difference in miR-21 expression between HCC and cirrhotic group (P < 0.0001) (AUC = 0.767). Logistic regression (LR) analysis revealed that combining miR-122 and miR-21 to differentiate cirrhotic from HCC subjects would relatively increase the AUC to 0.809 (P < 0.0001). Moreover, combining three miRNAs into one panel may have a promising diagnostic potential to differentiate healthy individuals from cirrhotic subjects with an AUC of value 0.922 (P = 0.0007). Conclusions: miR-122 can be utilized as standalone biomarkers or combined in a panel for enhancing diagnostic precision. Additionally, plasma miR-21 is useful particularly in monitoring cirrhosis progression into HCC meanwhile miR-155 seems not to be ideal if used alone among Egyptian patients.
Clinical Chemistry, Aug 1, 1998
Discover Nano, Feb 14, 2024
Chemoresistance and severe toxicities represent major drawbacks of chemotherapy. Natural extracts... more Chemoresistance and severe toxicities represent major drawbacks of chemotherapy. Natural extracts, including the essential oils of Pistacia lentiscus (PLEO), exhibit substantial anticancer and anti-inflammatory activities where different cancers are reported to dramatically recess following targeting with PLEO. PLEO has promising antimicrobial, anticancer, and anti-inflammatory properties. However, the therapeutic properties of PLEO are restricted by limited stability, bioavailability, and targeting ability. PLEO nanoformulation can maximize their physicochemical and therapeutic properties, overcoming their shortcomings. Hence, PLEO was extracted and its chemical composition was determined by GC-MS. PLEO and 5-Fluorouracil (5FU) were electrospun into poly-ε-caprolactone nanofibers (PCL-NFs), of 290.71 nm to 680.95 nm diameter, to investigate their anticancer and potential synergistic activities against triple-negative breast cancer cells (MDA-MB-231), human adenocarcinoma breast cancer cells (MCF-7), and human skin melanoma cell line (A375). The prepared nanofibers (NFs) showed enhanced thermal stability and remarkable physical integrity and tensile strength. Biodegradability studies showed prolonged stability over 42 days, supporting the NFs use as a localized therapy of breast tissues (postmastectomy) or melanoma. Release studies revealed sustainable release behaviors over 168 h, with higher released amounts of 5FU and PLEO at pH 5.4, indicating higher targeting abilities towards cancer tissues. NFs loaded with PLEO showed strong antioxidant properties. Finally, NFs loaded with either PLEO or 5FU depicted greater anticancer activities compared to free compounds. The highest anticancer activities were observed with NFs co-loaded with PLEO and 5FU. The developed 5FU-PLEO-PCL-NFs hold potential as a local treatment of breast cancer tissues (postmastectomy) and melanoma to minimize their possible recurrence.
RSC Sustainability, Dec 31, 2022
Cellulose is a widely available and renewable biopolymer that can be extracted from different nat... more Cellulose is a widely available and renewable biopolymer that can be extracted from different natural sources such as plants, and bacteria. Rice husk is of special interest as a source of cellulose, as it is abundant and has a high cellulose content. The extraction of cellulose from rice husk has traditionally been a multi-step procedure that is timeconsuming and involves the use of harsh chemicals. However, in this study, a one-step facile method was developed and optimized for the extraction of cellulose from rice husks. The process involved adjusting the ratio of sodium hypochlorite solution to the mass of solid rice husk and the progressive removal of non-cellulosic constituents was confirmed via scanning electron microscopy (SEM), and Maule lignin test. The extracted cellulose was then incorporated into glass ionomer cement (GIC) for dental applications. The mechanical properties of the GIC have increased in G12 and G18 vs. an observable decrease in G21 (p = 0.02 and p = 0.01, respectively), including increased compressive strength and stiffness. The addition of 3% cellulose extracted using C12 conditions (1 husk : 12 hypochlorite for 6 h) to GIC has increased GIC mechanical strength by 130% as compared to control GIC. The addition of 1% cellulose extracted using C18 conditions (1 husk : 18 hypochlorite for 6 h) to GIC has increased GIC mechanical strength by 58.5% as compared to the control. In conclusion, cellulose can be extracted from rice husks using a one-step facile method, and its incorporation into GIC can enhance its mechanical properties and improve its potential use for dental applications.
Social Science Research Network, 2022
Omics A Journal of Integrative Biology, May 1, 2021
ACS applied nano materials, Feb 28, 2023
ACS omega, Apr 28, 2022
Daily used cosmetics may contain high levels of heavy metals which are added to improve the quali... more Daily used cosmetics may contain high levels of heavy metals which are added to improve the quality and shine of cosmetics but represent a threat to human health. In this report, powder- and paper-based optical nanosensors using mesoporous silica nanospheres as carriers were designed for determination of Co2+ and Cd2+ in commonly used cosmetics. Powder optical chemosensors (POCs) were prepared via direct decoration of optical probes into a porous carrier. Paper-based chemosensors (PBCs) were designed via adsorbing the organic chromophore onto filter papers treated with mesoporous silica. POCs and PBCs were constructed with thick decoration of optical probes, leading to the formation of active surface centers for monitoring of Co2+ and Cd2+ in cosmetic products. The uniform structures of POCs and PBCs have resulted in selective sensing and low detection limits up to parts per billion, wide detection range determination, and fast response (on the order of seconds). Digital image colorimetric analysis (DICA) was used to quantify the color of PBCs and deduce the corresponding concentrations of Co2+ and Cd2+ using calibration curves. DICA data correlated well with that obtained from UV–vis spectrophotometry. The developed POCs and PBCs showed wide detection ranges of metal ions and a considerably low detection limit under optimal analysis conditions. The low limit of detection of Co2+ and Cd2+ ions using POCs was 6.7 × 10–9 and 3.5 × 10–9 M, respectively. To the best of our knowledge, this is the first time simple PBCs have been designed for monitoring Co2+ and Cd2+ with detection limits of 2.2 × 10–7 and 1.3 × 10–7 M. A limited amount of manufactured POCs (about 20 mg) were used for all measurements, and commercial filter paper treated with mesoporous nanosphere silica was used for sensing Co2+ and Cd2+ ions. The developed optical chemosensors had short regeneration times and exhibited high stability and surface functionality and are capable of monitoring Co2+ and Cd2+ in various cosmetic products.
Current Issues in Molecular Biology, Jun 8, 2023
This article is an open access article distributed under the terms and conditions of the Creative... more This article is an open access article distributed under the terms and conditions of the Creative Commons Attribution (CC BY
Spectrochimica Acta Part A: Molecular and Biomolecular Spectroscopy, Sep 1, 2022
Screening for microbial contaminants in fresh produce is a lengthy process relative to their shor... more Screening for microbial contaminants in fresh produce is a lengthy process relative to their short shelf-life. The aim of this study is to develop a comprehensive assay which employs FTIR and spectral classification algorithm for detection of bacterial contamination of fresh produce. The procedure starts by soaking a sample of the fresh produce in broth for 5 h. Then, magnetic nanoparticles are added to capture bacteria which are then collected and prepared for FTIR scanning. The generated FTIR spectra are compared against an in-house database of different bacterial species (n = 6). The ability of the database to discriminate contaminated and uncontaminated samples and to identify the bacterial species was assessed. The compatibility of the FTIR procedures with subsequent DNA extraction and PCR was tested. The developed procedure was applied for assessment of bacterial contamination in fresh produce samples from the market (n = 78). Results were compared to the conventional culture methods. The generated FTIR database coupled to spectral classification was able to detect bacterial contamination with overall accuracy exceeding 90%. The sample processing did not alter the integrity of the bacterial DNA which was suitable for PCR. On application to fresh produce samples collected from the market, the developed method was able to detect bacterial contamination with 94% concordance with the culture method. In conclusion, the developed procedure can be applied for fast detection of microbial contamination in fresh produce with comparable accuracy to conventional microbiological assays and is compatible with subsequent molecular assays.
Humana Press eBooks, Oct 4, 2007
Ethanol, commonly also referred to as alcohol, is widely used as well as abused, and measurement ... more Ethanol, commonly also referred to as alcohol, is widely used as well as abused, and measurement of alcohol is a common test in clinical toxicology and forensic laboratories. Although blood alcohol measurement is most commonly used, alcohol can also be measured in breath, urine, saliva and vitreous humor. Whole blood alcohol levels are lower than serum alcohol levels, and the value depends on the hematocrit. Although enzymatic assays based on capability of alcohol dehydrogenase to convert alcohol to acetaldehyde is widely used for rapid determination of serum or plasma alcohol concentrations, values may be elevated in postmortem serum as well as in patients with highly elevated lactate and lactate dehydrogenase level in blood. Gas chromatographic methods widely used for determination of forensic alcohol are considered as the reference method, and there are also few reports of using gas chromatography combined with mass spectrometry for determination of alcohol concentrations in biological matrix.
Nanoscale advances, 2022
Please note that technical editing may introduce minor changes to the text and/or graphics, which... more Please note that technical editing may introduce minor changes to the text and/or graphics, which may alter content. The journal's standard Terms & Conditions and the Ethical guidelines still apply. In no event shall the Royal Society of Chemistry be held responsible for any errors or omissions in this Accepted Manuscript or any consequences arising from the use of any information it contains.
Microchemical Journal, Sep 1, 2018
Analytical Biochemistry, Nov 1, 2020
This is a PDF file of an article that has undergone enhancements after acceptance, such as the ad... more This is a PDF file of an article that has undergone enhancements after acceptance, such as the addition of a cover page and metadata, and formatting for readability, but it is not yet the definitive version of record. This version will undergo additional copyediting, typesetting and review before it is published in its final form, but we are providing this version to give early visibility of the article. Please note that, during the production process, errors may be discovered which could affect the content, and all legal disclaimers that apply to the journal pertain.
Computers in Biology and Medicine, Jul 1, 2021
Corona Virus 2019 Disease (COVID-19) is a rapidly emerging pandemic caused by a newly discovered ... more Corona Virus 2019 Disease (COVID-19) is a rapidly emerging pandemic caused by a newly discovered beta coronavirus, called Sever Acute Respiratory Syndrome Coronavirus 2 (SARS CoV-2). SARS CoV-2 is an enveloped, single stranded RNA virus that depends on RNA-dependent RNA polymerase (RdRp) to replicate. Therefore, SARS CoV-2 RdRp is considered as a promising target to cease virus replication. SARS CoV-2 polymerase shows high structural similarity to Hepatitis C Virus-1b genotype (HCV-1b) polymerase. Arising from the high similarity between SARS CoV-2 RdRp and HCV NS5B, we utilized the reported small-molecule binders to the palm subdomain of HCV NS5B (genotype 1b) to generate a high-quality DEKOIS 2.0 benchmark set and conducted a benchmarking analysis against HCV NS5B. The three highly cited and publicly available docking tools AutoDock Vina, FRED and PLANTS were benchmarked. Based on the benchmarking results and analysis via pROC-Chemotype plot, PLANTS showed the best screening performance and can recognize potent binders at the early enrichment. Accordingly, we used PLANTS in a prospective virtual screening to repurpose both the FDA-approved drugs (DrugBank) and the HCV-NS5B palm subdomain binders (BindingDB) for SARS CoV-2 RdRp palm subdomain. Further assessment by molecular dynamics simulations for 50 ns recommended diosmin (from DrugBank) and compound 3 (from BindingDB) to be the best potential binders to SARS CoV-2 RdRp palm subdomain. The best predicted compounds are recommended to be biologically investigated against COVID-19. In conclusion, this work provides in-silico analysis to propose possible SARS CoV-2 RdRp palm subdomain binders recommended as a remedy for COVID-19. Up-to-our knowledge, this study is the first to propose binders at the palm subdomain of SARS CoV2 RdRp. Furthermore, this study delivers an example of how to make use of a high quality custom-made DEKOIS 2.0 benchmark set as a procedure to elevate the virtual screening success rate against a vital target of the rapidly emerging pandemic.
Biotechnology Letters, Dec 10, 2019
Citrullus colocynth (CTC) is a wild medicinal plant with proven antimicrobial activity. The aim o... more Citrullus colocynth (CTC) is a wild medicinal plant with proven antimicrobial activity. The aim of this study is to investigate the use of its aqueous extract in producing magnetic iron oxide nanoparticles (MNPs) with improved antimicrobial activity. The cold and hot aqueous extract of seed and pulp parts of CTC, respectively, were used to produce MNPs. The particles were characterized by transmission electron microscope, energy dispersion x-ray, FTIR and their surface charge were measured. The antimicrobial activity of the produced particles was assessed against two Gram positive (Bacillus subtillis and Staphylococcus aureus) and two Gram negative (Escherichia coli and Pseudomonas aeruginosa) bacteria and well as against Candida albicans. MNPs synthesized using cold seed extract (S-MNP) and pulp extract (P-MNP) were spherical in shape. The size distribution was more uniform in the S-MNP (6–15 nm) compared to the P-MNP (12–45 nm). Both particles showed comparable anti-microbial potential against the tested microorganisms. At a concentration range of 0.48–1000 μg/mL, S-MNP inhibited bacterial growth by 16.0–99.0% and 10.0–91.0%; while P-MNP inhibition was 11.0–100.0% and 11.0–99.0% for Gram positive and negative bacteria; respectively. Candida albicans was the least affected microorganism with maximum inhibition of 63–88% after treatment with S-MNP and P-MNP (1 mg/mL), respectively. The aqueous extract of CTC can be used for synthesis of MNPs with antimicrobial activity. The described procedures are simple and can be modified for large scale green synthesis of MNPs.
Analytical Chemistry Letters, Mar 3, 2020
The interest in lactobionic acid (LA) in nano-pharmaceuticals is growing due to its selective aff... more The interest in lactobionic acid (LA) in nano-pharmaceuticals is growing due to its selective affinity to liver cells. Currently there is no suitable analytical method for the determination of LA in nanoparticles or other matrices. There is a need for a quantitative assay to accurately determine LA in nano-particles as well as in other matrices. In this study, a HILIC-MS/MS method was developed and validated for the analysis of LA. The method was applied for the assessment of chitosan nanoparticles (CNP) functionalization. The developed method was valid for the determination of LA with a LOD and LOQ of 1 and 5 ng/mL, respectively. The method was applied for the determination of unreacted LA after nanoparticle functionalization and revealed that a loading-capacity of 24 % was achieved. In conclusion, the developed method is the first report for the quantitative determination of LA functionalization on nanoparticles. The method can be directly applied in the qualitycontrol applications for the assessment of nanoparticle functionalization with LA and may be extended for quality control applications of other LA-containing products.
ACS omega, Apr 11, 2022
The present study describes the development of multifunctional hemostatic sponges to control blee... more The present study describes the development of multifunctional hemostatic sponges to control bleeding. Chitosan (Ch) and poly(vinyl alcohol) (PVA) were selected as the basic polymeric matrix [Ch/PVA] for sponges. Glycerol and citric acid were used as crosslinkers [Ch/PVA/G(Cl)] to enhance the mechanical properties of the developed sponges. Ciprofloxacin (AB) was added to the developed sponge to impart antibacterial activity. Hydroxyapatite (HA) was also added, which would make the sponge suitable for bone surgery. Among the developed sponges, the Ch/PVA/G(Cl)-HA-AB sponge demonstrated enhanced cell viability, mechanical properties, and strong antimicrobial effect against Escherichia coli, Pseudomonas aeruginosa, and Staphylococcus aureus, in addition to platelet aggregation activity. The addition of ciprofloxacin and hydroxyapatite promotes a unique synergistic effect of antimicrobial activity and hemostasis. Thus, the present study introduces Ch/PVA/G(Cl)-HA-AB, a multifunctional hemostatic sponge that would be suitable for bone surgical applications.
Meta Gene, Dec 1, 2020
Background & aim: Circulatory miRNAs have emerged as promising non-invasive biomarkers for early ... more Background & aim: Circulatory miRNAs have emerged as promising non-invasive biomarkers for early diagnosis and prognosis of various disease stages. In this study, we investigated expression profiles for circulatory miRNAs (21, 122 and 155) in Egyptian patients with HCV mediated hepatic disorders. Methods: Expression profiles were assessed in plasma of 40 healthy subjects, 37 chronic HCV (CHC), 39 cirrhotic and 40 hepatocellular carcinoma (HCC) patients using RT-PCR. Results: miR-21 and miR-122 levels were significantly up-regulated in HCC in comparison to all other groups with log2 values of 5.45 and 6 respectively. There was also significant difference in miR-21 expression between HCC and cirrhotic group (P < 0.0001) (AUC = 0.767). Logistic regression (LR) analysis revealed that combining miR-122 and miR-21 to differentiate cirrhotic from HCC subjects would relatively increase the AUC to 0.809 (P < 0.0001). Moreover, combining three miRNAs into one panel may have a promising diagnostic potential to differentiate healthy individuals from cirrhotic subjects with an AUC of value 0.922 (P = 0.0007). Conclusions: miR-122 can be utilized as standalone biomarkers or combined in a panel for enhancing diagnostic precision. Additionally, plasma miR-21 is useful particularly in monitoring cirrhosis progression into HCC meanwhile miR-155 seems not to be ideal if used alone among Egyptian patients.
Clinical Chemistry, Aug 1, 1998